Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq134 131 2e-25 seq302 118 1e-21 >seq134 Length=7744 Score = 131 bits (144), Expect = 2e-25 Identities = 409/629 (65%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 116659 TACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTT 116717 |||||| ||| || ||||||||||| |||| | || | || | | ||||| || | Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACC-ATAGACATCCGCCAAGCCTGGCGCTTC 5121 Query 116718 ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 116777 || || || ||||||| ||||| ||| | |||||| |||||||| ||||| || || Sbjct 5120 ATTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGG 5061 Query 116778 GATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 116837 |||| || || ||| ||||| ||| ||| ||||||| | || || || ||| Sbjct 5060 TGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACG 5001 Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 116897 | ||||| || || | ||||| | |||||||||||| || || | |||| | || Sbjct 5000 GAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCC 4941 Query 116898 CTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 | || | ||| |||||| ||||| || || || ||| || ||||| ||||| Sbjct 4940 CGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCAT 4881 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGAC 117014 ||||| ||| || | || |||||||| || ||| ||| | || | | | Sbjct 4880 TGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAAT 4821 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074 ||| |||| | ||||||||| || || |||||| || || || | | | Sbjct 4820 GCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAA 4761 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134 || |||| || || || || ||| |||| | |||| |||||||| | ||| Sbjct 4760 CGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCAT 4701 Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 || || || ||||| || ||||| ||||| || | || || |||| | ||| Sbjct 4700 CTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTG 4641 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||| | ||||| || | ||| | || || || ||||| |||| | Sbjct 4640 AGACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGC 4581 Query 117255 GACCCGCATAAACATGTATTG-GGGTGTT 117282 || ||||| | ||||| ||| ||| ||| Sbjct 4580 AACACGCATGATCATGTGTTGAGGGCGTT 4552 >seq302 Length=30871 Score = 118 bits (130), Expect = 1e-21 Identities = 304/456 (67%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || || || ||||||||||| || || || | ||| ||| || ||||| Sbjct 11198 GTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCAT 11257 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || ||||||||||| | ||||| | | || ||| ||| || | |||||| Sbjct 11258 GAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGC--AACGAGGAGG 11315 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 127407 ||||| | |||| |||||||||| | |||| || | |||||| |||| || | Sbjct 11316 CGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCG 11375 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || ||||||||| || ||| |||| ||| ||| || |||||||| | ||| Sbjct 11376 AC-TGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATCCT 11434 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAA---AGTCTTGAAGAGTTCCACA-GCAA 127523 | | || || | ||| | | || || || || ||| ||| |||| Sbjct 11435 CTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAG----ACAGGCAA 11490 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| | ||||||||||| || || || || || || || ||||| |||| Sbjct 11491 AATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCA 11550 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 | ||||| || ||||||| |||||| || | | || || || ||||||||| || | Sbjct 11551 TAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTT 11610 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 | ||| ||||| || | ||||||| ||||||| Sbjct 11611 CAACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGG 11646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613473119675040