Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq134 131 2e-25
seq302 118 1e-21
>seq134
Length=7744
Score = 131 bits (144), Expect = 2e-25
Identities = 409/629 (65%), Gaps = 6/629 (1%)
Strand=Plus/Minus
Query 116659 TACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTT 116717
|||||| ||| || ||||||||||| |||| | || | || | | ||||| || |
Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACC-ATAGACATCCGCCAAGCCTGGCGCTTC 5121
Query 116718 ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 116777
|| || || ||||||| ||||| ||| | |||||| |||||||| ||||| || ||
Sbjct 5120 ATTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGG 5061
Query 116778 GATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 116837
|||| || || ||| ||||| ||| ||| ||||||| | || || || |||
Sbjct 5060 TGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACG 5001
Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 116897
| ||||| || || | ||||| | |||||||||||| || || | |||| | ||
Sbjct 5000 GAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCC 4941
Query 116898 CTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954
| || | ||| |||||| ||||| || || || ||| || ||||| |||||
Sbjct 4940 CGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCAT 4881
Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGAC 117014
||||| ||| || | || |||||||| || ||| ||| | || | | |
Sbjct 4880 TGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAAT 4821
Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074
||| |||| | ||||||||| || || |||||| || || || | | |
Sbjct 4820 GCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAA 4761
Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134
|| |||| || || || || ||| |||| | |||| |||||||| | |||
Sbjct 4760 CGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCAT 4701
Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194
|| || || ||||| || ||||| ||||| || | || || |||| | |||
Sbjct 4700 CTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTG 4641
Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254
||||| | ||||| || | ||| | || || || ||||| |||| |
Sbjct 4640 AGACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGC 4581
Query 117255 GACCCGCATAAACATGTATTG-GGGTGTT 117282
|| ||||| | ||||| ||| ||| |||
Sbjct 4580 AACACGCATGATCATGTGTTGAGGGCGTT 4552
>seq302
Length=30871
Score = 118 bits (130), Expect = 1e-21
Identities = 304/456 (67%), Gaps = 14/456 (3%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || || || ||||||||||| || || || | ||| ||| || |||||
Sbjct 11198 GTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCAT 11257
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| ||||||||||| | ||||| | | || ||| ||| || | ||||||
Sbjct 11258 GAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGC--AACGAGGAGG 11315
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 127407
||||| | |||| |||||||||| | |||| || | |||||| |||| || |
Sbjct 11316 CGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCG 11375
Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467
|| ||||||||| || ||| |||| ||| ||| || |||||||| | |||
Sbjct 11376 AC-TGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATCCT 11434
Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAA---AGTCTTGAAGAGTTCCACA-GCAA 127523
| | || || | ||| | | || || || || ||| ||| ||||
Sbjct 11435 CTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAG----ACAGGCAA 11490
Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583
| || ||| | ||||||||||| || || || || || || || ||||| ||||
Sbjct 11491 AATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCA 11550
Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643
| ||||| || ||||||| |||||| || | | || || || ||||||||| || |
Sbjct 11551 TAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTT 11610
Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
| ||| ||||| || | ||||||| |||||||
Sbjct 11611 CAACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGG 11646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613473119675040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |