Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq819 152 1e-31 >seq819 Length=4427 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || || || ||||||| ||| || || | ||| || | |||||| Sbjct 1791 AGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCT 1732 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||| ||||| ||||| ||||| || |||||| ||| Sbjct 1731 TCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCC 1672 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||| |||| ||| |||| | ||| || ||||| ||||| ||| Sbjct 1671 TGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTC 1612 Query 199598 TTACCCGTGAGAGTTTTCACAA 199619 || || ||||| |||||||||| Sbjct 1611 TTGCCAGTGAGGGTTTTCACAA 1590 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || || || ||||||| |||||||| | | ||| Sbjct 2028 CGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTT 1969 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||| ||||| |||||||| || || |||||||| || || || Sbjct 1968 CGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCC 1909 Query 199529 TCTCGCTCCTGAATCTTTTGC--TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || || | |||||| || ||| |||| ||| |||| |||| || || | Sbjct 1908 TCTTTATCTTGGA--TTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAA 1851 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || || || || Sbjct 1850 GAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTG 1811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178854473677748