Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1424 107 2e-18 seq819 100 3e-16 seq1691 96.9 4e-15 >seq1424 Length=24560 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| || || ||| || || || | || || ||||| ||||||||||| | Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||||| || | | |||||| ||| ||| || |||||| | Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||||| || || || || | |||||||| |||||||| || || || || | Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630 Query 46584 AG 46585 || Sbjct 23629 AG 23628 >seq819 Length=4427 Score = 100 bits (110), Expect = 3e-16 Identities = 171/243 (70%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 46356 TATATT-ATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATA 46414 |||||| | | ||| || | || | |||||||| ||| | || |||||||| || || Sbjct 2274 TATATTTAGTGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATG 2215 Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474 |||||||| || || || || | || || ||||| || || || || || | |||||| Sbjct 2214 TTGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGC 2155 Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTC 46533 || || | || | | |||||||| ||| || | || | ||| | || ||||| Sbjct 2154 TGATCTGGTGGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTA-CGTTGTCAATTGTGTC 2096 Query 46534 ---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 |||| || || |||| |||||||||||||| ||||| ||||| || ||||| || Sbjct 2095 AGAGCTC---TCGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTG 2039 Query 46591 CAT 46593 ||| Sbjct 2038 CAT 2036 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| ||||| || || || |||| || ||||||||||||||||| Sbjct 1437 CTCCTTCTGGATATTGTAATCGGACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 1378 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | |||||| ||||| | || | | ||||||||| Sbjct 1377 GATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTC 1339 >seq1691 Length=23441 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || || || || |||| || ||||| ||||| ||||| Sbjct 9010 TCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAG 9069 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||| |||||||||| || | || ||||||||| Sbjct 9070 ATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC 9107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565207001006880