Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq302 154 1e-32
seq1424 109 5e-19
seq1691 107 2e-18
seq819 105 7e-18
>seq302
Length=30871
Score = 154 bits (170), Expect = 1e-32
Identities = 200/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 11811 GTAGGTGTCGATGAGGAGGGAGTAGGTCTCTGAGTGAATGTTCTCCATCATGATCTGGAA 11870
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || |||||| ||||| || || ||||||||| ||||| ||
Sbjct 11871 GCCGTAGAAGCAACGAGCCTCGGGAACCTGAACCTCCCCGCTGAAACGCTCAACCAGGTT 11930
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||| ||||| || |||||||| || |||| |||||| |||||| | ||
Sbjct 11931 TTCGTTGACAATGCCATCCGACGCGGCGAAGAATGCCAACACGTGTGAGATGAAGTACCG 11990
Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||||||| | | ||| ||| | || || || ||||| | || ||
Sbjct 11991 CTCATCATCGTTCAATCTGTTGTTCCAATCGTGAAGATCTTTTGAGAGGTCAATTTCTTC 12050
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| ||||||||||| ||||| || |||||
Sbjct 12051 TGCAGTCCAGAACGACGCCTCTGCTTTCTTATACAT 12086
>seq1424
Length=24560
Score = 109 bits (120), Expect = 5e-19
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| |||||||| | || |||||| ||| ||||| | |
Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688
Query 38313 CA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| ||||||| || || ||||| || || ||||||| |||||
Sbjct 23689 GACAATG--TCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGAT 23746
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| ||||||||||| || || | || || || | ||| || ||||||||||
Sbjct 23747 TGATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAA 23806
Query 38431 AGG 38433
|||
Sbjct 23807 AGG 23809
>seq1691
Length=23441
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| ||||||| || || | || | ||| ||||||||||| ||
Sbjct 9107 GACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGAG 9048
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || ||||| ||||||||||||||||||||| |||| || || | ||||||
Sbjct 9047 GACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCTG 8988
Query 38457 CGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 8987 CGTCTGCGTGGTGG 8974
>seq819
Length=4427
Score = 105 bits (116), Expect = 7e-18
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || || |||||||||||||| | || |||||| | |
Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| |||| |||| ||| ||||| || || || || | || ||
Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAA-TCCAAGACAAGGAAGGGATCCCACCAGATCA 2154
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || |||||||| || || | || || || ||||||||
Sbjct 2155 GCAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAA 2214
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||| || ||||| ||| || || ||||||||| || | ||| | || ||||
Sbjct 2215 CATTCAGAAGGAGAGC-ACTCTCCATTTGGTGTTGAGATTGCGGGGTGGCC 2264
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
||||| | ||||| ||||| || || | ||||||||||| || || | ||| |||||
Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| || ||||| ||| ||||| ||||| ||||| | || || ||
Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCAC 1449
Query 38448 TTGGTGCTGCGT 38459
||||| || |||
Sbjct 1450 TTGGTTCTCCGT 1461
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314
|| ||||| ||||| ||||| ||||||||| | || || || | | || | | | |
Sbjct 1592 GTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCGAC 1651
Query 38315 AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
|||| | |||| ||||||| || ||||| || || ||| | || || || || || |
Sbjct 1652 AACG--TGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGA 1709
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | ||| || || ||||| || || | |||||| | || || ||||||||||| |
Sbjct 1710 TCTTCGCTGGAAAGCAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAG 1769
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | ||||| ||| | || || |||
Sbjct 1770 AATCAACGCTCCATCTTGTCCTTCGT 1795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500145015400960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |