Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq302 154 1e-32 seq1424 109 5e-19 seq1691 107 2e-18 seq819 105 7e-18 >seq302 Length=30871 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 11811 GTAGGTGTCGATGAGGAGGGAGTAGGTCTCTGAGTGAATGTTCTCCATCATGATCTGGAA 11870 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| ||||| || || ||||||||| ||||| || Sbjct 11871 GCCGTAGAAGCAACGAGCCTCGGGAACCTGAACCTCCCCGCTGAAACGCTCAACCAGGTT 11930 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||| ||||| || |||||||| || |||| |||||| |||||| | || Sbjct 11931 TTCGTTGACAATGCCATCCGACGCGGCGAAGAATGCCAACACGTGTGAGATGAAGTACCG 11990 Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||||||| | | ||| ||| | || || || ||||| | || || Sbjct 11991 CTCATCATCGTTCAATCTGTTGTTCCAATCGTGAAGATCTTTTGAGAGGTCAATTTCTTC 12050 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||||||||| ||||| || ||||| Sbjct 12051 TGCAGTCCAGAACGACGCCTCTGCTTTCTTATACAT 12086 >seq1424 Length=24560 Score = 109 bits (120), Expect = 5e-19 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| |||||||| | || |||||| ||| ||||| | | Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688 Query 38313 CA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| ||||||| || || ||||| || || ||||||| ||||| Sbjct 23689 GACAATG--TCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGAT 23746 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||||||||| || || | || || || | ||| || |||||||||| Sbjct 23747 TGATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAA 23806 Query 38431 AGG 38433 ||| Sbjct 23807 AGG 23809 >seq1691 Length=23441 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| ||||||| || || | || | ||| ||||||||||| || Sbjct 9107 GACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGAG 9048 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || ||||| ||||||||||||||||||||| |||| || || | |||||| Sbjct 9047 GACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCTG 8988 Query 38457 CGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 8987 CGTCTGCGTGGTGG 8974 >seq819 Length=4427 Score = 105 bits (116), Expect = 7e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || |||||||||||||| | || |||||| | | Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| |||| ||| ||||| || || || || | || || Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAA-TCCAAGACAAGGAAGGGATCCCACCAGATCA 2154 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || |||||||| || || | || || || |||||||| Sbjct 2155 GCAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAA 2214 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| || ||||| ||| || || ||||||||| || | ||| | || |||| Sbjct 2215 CATTCAGAAGGAGAGC-ACTCTCCATTTGGTGTTGAGATTGCGGGGTGGCC 2264 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||| | ||||| ||||| || || | ||||||||||| || || | ||| ||||| Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| || ||||| ||| ||||| ||||| ||||| | || || || Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCAC 1449 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 1450 TTGGTTCTCCGT 1461 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || ||||| ||||| ||||| ||||||||| | || || || | | || | | | | Sbjct 1592 GTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCGAC 1651 Query 38315 AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 |||| | |||| ||||||| || ||||| || || ||| | || || || || || | Sbjct 1652 AACG--TGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGA 1709 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || || ||||| || || | |||||| | || || ||||||||||| | Sbjct 1710 TCTTCGCTGGAAAGCAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAG 1769 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | ||||| ||| | || || ||| Sbjct 1770 AATCAACGCTCCATCTTGTCCTTCGT 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145015400960