Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2446 132 4e-25 seq4334 93.3 3e-13 >seq2446 Length=49932 Score = 132 bits (146), Expect = 4e-25 Identities = 222/321 (69%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 |||||||||||| || | ||| | | |||||||||||||| || || ||||| || Sbjct 48348 TTTTCTCTTGAATTCGTTTACAAAGTGGTTAACAAGACGATTATCGAAGTCCTCACCACC 48407 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 ||| | ||| | || | || | | || | ||| | || ||||||| || | || Sbjct 48408 CAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCCTCTTCAATAGTAAGGAG 48467 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 | ||||| || |||||||||| || ||||| || ||||| ||| || Sbjct 48468 GGAGACATCGAAAGTACCACCACCCAAGTCGAAAATGAGAACATTGCGTTCACCCTCGGC 48527 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || || |||||||| ||||||| ||||||||| || ||||| || || || | | || Sbjct 48528 CTTCTTGTCAAGACCGTACGCAATAGCAGCAGCGGTAGGTTCGTTGATGATACGGAGGAC 48587 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 ||| ||||| ||||| || ||||| || || ||||| | || ||||| || || || Sbjct 48588 ATTGAGACCGGCAATGAGACCAGCATCCTTGGTAGCTTGGCGCTGGGAATCATTGAAGTA 48647 Query 518284 TGCAGGAACAGTAATAACGGC 518304 || || ||||||| ||||| Sbjct 48648 GGCGGGGACAGTAACGACGGC 48668 >seq4334 Length=62496 Score = 93.3 bits (102), Expect = 3e-13 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 671622 TTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATG 671680 ||||| || ||||||| | || ||||| ||| ||| ||||||||||| | ||| Sbjct 46129 TTTGTTGAGAATTCTTATCTTCGTGGTCTCACCCCTACTGAGTTTTTCTTCCATGCTATG 46070 Query 671681 GCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATATTCAA 671740 || |||||||| ||| ||||| |||| ||| | || |||||||| ||||| ||||| || Sbjct 46069 GCTGGTCGTGAGGGTCTTATTGATACTGCTGTCAAGACTGCTGAAACTGGATATATCCAG 46010 Query 671741 AGAAAACTTGTTAAAATGCTCGAAGA 671766 | || ||||| || ||| ||||| Sbjct 46009 CGGAAGCTTGTGAAGGCGCTTGAAGA 45984 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||||||||| ||| | | ||| ||||||||||||||||||||| | || || ||| Sbjct 47551 GGTAAAGAAGGCCGTCTACGTCAAAACTTGATGGGAAAACGTGTCGATTTTTCGGCTCGT 47492 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || |||||||| |||||| ||| | || | | |||||||| ||||| Sbjct 47491 ACGGTTATTACAGGTGATCCGAATCTCTCTTTGGACGAAGTTGGAGTTCC 47442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780601874081464