Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq2446 132 4e-25
seq4334 93.3 3e-13
>seq2446
Length=49932
Score = 132 bits (146), Expect = 4e-25
Identities = 222/321 (69%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043
|||||||||||| || | ||| | | |||||||||||||| || || ||||| ||
Sbjct 48348 TTTTCTCTTGAATTCGTTTACAAAGTGGTTAACAAGACGATTATCGAAGTCCTCACCACC 48407
Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103
||| | ||| | || | || | | || | ||| | || ||||||| || | ||
Sbjct 48408 CAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCCTCTTCAATAGTAAGGAG 48467
Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163
| ||||| || |||||||||| || ||||| || ||||| ||| ||
Sbjct 48468 GGAGACATCGAAAGTACCACCACCCAAGTCGAAAATGAGAACATTGCGTTCACCCTCGGC 48527
Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223
|| || |||||||| ||||||| ||||||||| || ||||| || || || | | ||
Sbjct 48528 CTTCTTGTCAAGACCGTACGCAATAGCAGCAGCGGTAGGTTCGTTGATGATACGGAGGAC 48587
Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283
||| ||||| ||||| || ||||| || || ||||| | || ||||| || || ||
Sbjct 48588 ATTGAGACCGGCAATGAGACCAGCATCCTTGGTAGCTTGGCGCTGGGAATCATTGAAGTA 48647
Query 518284 TGCAGGAACAGTAATAACGGC 518304
|| || ||||||| |||||
Sbjct 48648 GGCGGGGACAGTAACGACGGC 48668
>seq4334
Length=62496
Score = 93.3 bits (102), Expect = 3e-13
Identities = 109/146 (75%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 671622 TTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATG 671680
||||| || ||||||| | || ||||| ||| ||| ||||||||||| | |||
Sbjct 46129 TTTGTTGAGAATTCTTATCTTCGTGGTCTCACCCCTACTGAGTTTTTCTTCCATGCTATG 46070
Query 671681 GCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATATTCAA 671740
|| |||||||| ||| ||||| |||| ||| | || |||||||| ||||| ||||| ||
Sbjct 46069 GCTGGTCGTGAGGGTCTTATTGATACTGCTGTCAAGACTGCTGAAACTGGATATATCCAG 46010
Query 671741 AGAAAACTTGTTAAAATGCTCGAAGA 671766
| || ||||| || ||| |||||
Sbjct 46009 CGGAAGCTTGTGAAGGCGCTTGAAGA 45984
Score = 86.0 bits (94), Expect = 5e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||||||||| ||| | | ||| ||||||||||||||||||||| | || || |||
Sbjct 47551 GGTAAAGAAGGCCGTCTACGTCAAAACTTGATGGGAAAACGTGTCGATTTTTCGGCTCGT 47492
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964
|| |||||||| |||||| ||| | || | | |||||||| |||||
Sbjct 47491 ACGGTTATTACAGGTGATCCGAATCTCTCTTTGGACGAAGTTGGAGTTCC 47442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780601874081464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |