Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2446 306 5e-78 seq1026 129 7e-25 seq134 116 5e-21 seq179 104 3e-17 seq768 87.8 2e-12 >seq2446 Length=49932 Score = 306 bits (338), Expect = 5e-78 Identities = 485/689 (70%), Gaps = 10/689 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||||||||| || || || || || | ||||| || ||||| || Sbjct 48390 ATCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCC 48449 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | | | || ||||| || ||||||||||||| ||| |||||||| || Sbjct 48450 CTCTTCAATAGTAAGGAGGGAGACATCGAAAGTACCACCACCCAAGTCGAAAATGAGAAC 48509 Query 7576 GTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || ||| || | || ||||| || ||||||||||| ||||| || || || |||| Sbjct 48510 ATTGCGT-TCACCCTCGGCCTTCTTGTCAAGACCGTACGCAATAGCAGCAGCGGTAGGTT 48568 Query 7635 CATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 | || || |||| || |||| || || || ||||| | ||||| || || ||||| Sbjct 48569 CGTTGATGATACGGAGGACA-TTGAGACCGGCAATGAGACCAGCATCCTTGGTAGCTTGG 48627 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| || |||||||| ||||| || ||||| |||| |||| | ||| Sbjct 48628 CGCTGGGAATCATTGAAGTAGGCGGGGACAGTAACGACGGCGTTGTTGACAGTGCCACCA 48687 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 ||||| | || ||| | ||| |||| ||||| || ||||| || || ||||| |||| Sbjct 48688 AGATATGCCTCAGCGGTCTCTCTCATCTTGGTGAGGACCATGGAGGAGATCTCCTCAGGA 48747 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | |||| || || || || || || || | | ||| | || || |||| | Sbjct 48748 GTGAACTCCTTGGTCTCGCCCTTGAACTCGATCTGAATGACAGGCTT---GCCAGCTTTG 48804 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 ||| | ||| | | ||| |||||||| ||||||| || | ||||| Sbjct 48805 TCGATGATCTTGAAGGGGAAATGCTTCATATCAGACTGGACCTCAGCATCGGCGAACTTG 48864 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | || || ||||||||||| || ||||||||||| | ||||||||||| ||| ||| Sbjct 48865 CGGCCAATGAGACGCTTTGCGTCGAAAACTGTGTTGCTTGGGTTCATGGCGACTTGATTC 48924 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || || ||||| || || || | || || || || ||| |||| || || Sbjct 48925 TTTGCAGCATCACCGATGAGGCGCTC---TGTGTCTGTGAAAGCAACGAACGAGGGTGTG 48981 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || || || || |||||||| ||||| ||||| | |||||| | | ||| ||| ||| Sbjct 48982 GTCCGGTTACCCTGGTCGTTGGCAATGATTTCGATGCGGTCATCACGATAGATGCCCACG 49041 Query 8114 CACGAATACGTTGTTCCTAAATCAATACC 8142 || || ||||| || || ||||| ||||| Sbjct 49042 CAGGAGTACGTGGTACCCAAATCGATACC 49070 Score = 159 bits (176), Expect = 4e-34 Identities = 256/368 (70%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 ||||| || || ||||| | || ||||| || || |||||||| ||||| || | || Sbjct 47874 AAGATAGCAGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTG 47933 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 || | || || ||||| || |||| || | | | || || | ||||| || || Sbjct 47934 TTTGGCTCCTTTCCGTTGAAGAAATCGGAGACGAGCTTCTGGATCCTGGGGATACGGGTA 47993 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 || |||||||| | |||||||||| || |||||||||||||| | ||| || || Sbjct 47994 GAGCCACCGACAAGGACGATTTCATGGACGGAAGATTTATCGATCTTGGCGTCGCGGAGA 48053 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 || || || ||||| |||||| | |||| || || ||||| ||||| Sbjct 48054 ACACGCTCAACGGGCTCCATGGTGGAACGGAAGAGGTCCTGGCAAAGCTCCTCGAAACGG 48113 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 |||||||| ||||| || |||||||||| || ||||| | || || |||||||| | Sbjct 48114 GCACGGGTGATGGAGGTGTAGAAATCAATACCCTCGTACAGAGAGTCGATTTCAATAGAA 48173 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 || || || | || || | || ||||| || ||||| || || || || | ||| || Sbjct 48174 GTCTGAGCAGCGGAGGAAAGGGTGCGCTTGGCACGCTCGCAGGCAGTGCGGAGACGGCGG 48233 Query 7379 AGGGCACG 7386 |||||||| Sbjct 48234 AGGGCACG 48241 >seq1026 Length=3903 Score = 129 bits (142), Expect = 7e-25 Identities = 259/382 (68%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 || |||| || ||| |||| ||||||| |||||| ||||| | | || | Sbjct 1886 TACCTTTTTTGGTTTTCCGTTGGAACTCTTTCTTGAAGTGGTCCAGGAGGTTGGTGTCAA 1827 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || | ||| |||||||| ||||| || ||||| || ||||| |||| || || | Sbjct 1826 AGTCCTGACCTCCCAAGTGGGTATCACCGGCGGTAGCCTTGACGGTGAAGACGCCACCCT 1767 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| | | |||||||| || || || || || || || ||||||| ||||| Sbjct 1766 GGATGTTGAGGAGGGAAACATCGAAAGTTCCTCCGCCAAGATCGTAAATGAGAACGTTAC 1707 Query 7581 TATCGTCGTCTTT--GTTCTTATCGA-GACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | || | | | | | ||||||| || ||||| || || || || |||| Sbjct 1706 GCTCCTTCTCCGACCGGCCAGAGCCAAGACCGTAGGCAATAGCAGCGGCGGTAGGCTCAT 1647 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || ||||| || ||||| ||| ||||| | | || || || || ||||||| || Sbjct 1646 TGATGATACGGAGGACGTTCAAGCCCGCAATGGCACCGGCGTCCTTGGTTGCTTGTCTTT 1587 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | ||| || ||||| || ||||| || || || || | ||||||||||| |||| | Sbjct 1586 GGTTATCATTGAAGTATGCTGGGACAGTAACAACAGCTTTTGTGACTTTCTTGGCGAGTT 1527 Query 7758 ACGATTCCGCGATATCTTTCAT 7779 | ||||||| |||||||| Sbjct 1526 TGGTCTCCGCGACTTCTTTCAT 1505 >seq134 Length=7744 Score = 116 bits (128), Expect = 5e-21 Identities = 397/614 (65%), Gaps = 15/614 (2%) Strand=Plus/Minus Query 105466 TATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGA 105525 || || ||||||||| | |||||||| ||| || || || | | || || | | Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCA 5120 Query 105526 TCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGA 105585 | || ||||| | | ||| | |||| ||||| || ||||| || | ||| || Sbjct 5119 TTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGT 5060 Query 105586 ATCCACATGGCT--GAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAAC 105643 |||| | ||| ||||||| || ||| || | ||||| | || || ||| || Sbjct 5059 GTCCAAAGAGCTAGGAAAAGA--TCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTAC 5002 Query 105644 GAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACC 105703 | | || | || |||| |||||| | |||||| ||||| | ||| | || | || | Sbjct 5001 GGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTC 4942 Query 105704 C------TTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 | |||| || ||| || | ||||||||| || || ||| | || || | Sbjct 4941 CCGGCCGTTTATTACCTCCC---TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCA 4885 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 |||||||| || || | || | |||||||||||| ||| | || | ||| Sbjct 4884 GCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCAC 4825 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACAC-TCT 105876 | | ||||| || | |||||||| ||||| ||| || ||||| ||| Sbjct 4824 GAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCT 4765 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 | || || ||||||||||| || ||||| || ||||| | | || ||||| ||||| Sbjct 4764 TCAAC-GTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAA 4706 Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAA 105996 | ||| || ||| || ||||| |||||||| || || || | ||||| |||| || Sbjct 4705 GCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAAT 4646 Query 105997 CCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCA 106056 || || | | || ||||| | ||| | || | ||| | ||||||||| || Sbjct 4645 TTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCG 4586 Query 106057 ATAGCGACGCGCAT 106070 | ||| || ||||| Sbjct 4585 ACAGCAACACGCAT 4572 >seq179 Length=7536 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 ||||||||||| || | ||| || || ||||| ||||| | || ||| || ||| || Sbjct 1467 TCGAGACCGTAGGCAAGAGCAGCAGCAGTTGGCTCATTGACAACACGTAGCACGTTAAGA 1408 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||| || | ||||| || || ||||| ||||| ||||| || |||||||| ||| Sbjct 1407 CCAGCGATCTGACCAGCATCCTTGGTAGCTTGACGTTGAGAATCATTGAAGTAGGCGGGG 1348 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || ||||| ||| | | || | |||||||| | ||| || | ||||||||| Sbjct 1347 ACAGTGACGACACCGTTCTTCACAGGTCTGCCGAGATAGGCTTCAGCAGTCTCTTTCATT 1288 Query 7781 TT 7782 || Sbjct 1287 TT 1286 >seq768 Length=27437 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 184052 AGTCCCTTGATATGACTTCCATCGTTATCTGCATCGGTCATGATCATGAGTCTTCCGTAT 184111 || ||||| ||||||||||| |||| ||| |||||||||||||||||| |||||| Sbjct 5813 AGACCCTTAATATGACTTCCGTCGTGGTCTTGATCGGTCATGATCATGAGATGTCCGTAG 5872 Query 184112 CTGAGTTCGGAGAGTG-ATGTATACACTTTCCCTTGCTGAAGCCCCAAAATCTTTTTAAG 184170 | ||| | | ||| |||||| ||||| ||||| || || | | ||||| | Sbjct 5873 CGGAGGCCCTTG-GTGTCGGTATACTCTTTCTTGTGCTGTAGTCCAAGGAAGTTTTTGAT 5931 Query 184171 ATCATTAAACTCCTTGTTTTCGGTAAGTTGTTTTACACTCGCGTCACGCACGTTCTTACA 184230 | | | ||| | |||| || | || | ||| ||||| || ||||| Sbjct 5932 GTTCTGGATTTCCGTATTTTTGGATATCTGATCAACAGAGGCGTCCCGGACGTTGAGCAG 5991 Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 || |||| || || || |||||| | ||||| | ||||||| | |||| || || Sbjct 5992 CTTTCCCCGTAGAGGGAATACACCGAAGAGATCAGGCCCAACAATAGCTCGACCGGCCAT 6051 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACA 184335 || | | ||||||||||| ||||| || | ||||| ||||| Sbjct 6052 GGCTAATCCCTTTGCAGAATCTCCTTCAGTCAGGATAAGGGTACA 6096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635097518372960