Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2446 306 5e-78
seq1026 129 7e-25
seq134 116 5e-21
seq179 104 3e-17
seq768 87.8 2e-12
>seq2446
Length=49932
Score = 306 bits (338), Expect = 5e-78
Identities = 485/689 (70%), Gaps = 10/689 (1%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||| || |||||||||||||| || || || || || | ||||| || ||||| ||
Sbjct 48390 ATCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCC 48449
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
||||||| | | | || ||||| || ||||||||||||| ||| |||||||| ||
Sbjct 48450 CTCTTCAATAGTAAGGAGGGAGACATCGAAAGTACCACCACCCAAGTCGAAAATGAGAAC 48509
Query 7576 GTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| ||| || | || ||||| || ||||||||||| ||||| || || || ||||
Sbjct 48510 ATTGCGT-TCACCCTCGGCCTTCTTGTCAAGACCGTACGCAATAGCAGCAGCGGTAGGTT 48568
Query 7635 CATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
| || || |||| || |||| || || || ||||| | ||||| || || |||||
Sbjct 48569 CGTTGATGATACGGAGGACA-TTGAGACCGGCAATGAGACCAGCATCCTTGGTAGCTTGG 48627
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753
|| || ||||| || |||||||| ||||| || ||||| |||| |||| | |||
Sbjct 48628 CGCTGGGAATCATTGAAGTAGGCGGGGACAGTAACGACGGCGTTGTTGACAGTGCCACCA 48687
Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813
||||| | || ||| | ||| |||| ||||| || ||||| || || ||||| ||||
Sbjct 48688 AGATATGCCTCAGCGGTCTCTCTCATCTTGGTGAGGACCATGGAGGAGATCTCCTCAGGA 48747
Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873
| |||| || || || || || || || | | ||| | || || |||| |
Sbjct 48748 GTGAACTCCTTGGTCTCGCCCTTGAACTCGATCTGAATGACAGGCTT---GCCAGCTTTG 48804
Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933
||| | ||| | | ||| |||||||| ||||||| || | |||||
Sbjct 48805 TCGATGATCTTGAAGGGGAAATGCTTCATATCAGACTGGACCTCAGCATCGGCGAACTTG 48864
Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993
| || || ||||||||||| || ||||||||||| | ||||||||||| ||| |||
Sbjct 48865 CGGCCAATGAGACGCTTTGCGTCGAAAACTGTGTTGCTTGGGTTCATGGCGACTTGATTC 48924
Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053
|| || || || ||||| || || || | || || || || ||| |||| || ||
Sbjct 48925 TTTGCAGCATCACCGATGAGGCGCTC---TGTGTCTGTGAAAGCAACGAACGAGGGTGTG 48981
Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113
|| || || || |||||||| ||||| ||||| | |||||| | | ||| ||| |||
Sbjct 48982 GTCCGGTTACCCTGGTCGTTGGCAATGATTTCGATGCGGTCATCACGATAGATGCCCACG 49041
Query 8114 CACGAATACGTTGTTCCTAAATCAATACC 8142
|| || ||||| || || ||||| |||||
Sbjct 49042 CAGGAGTACGTGGTACCCAAATCGATACC 49070
Score = 159 bits (176), Expect = 4e-34
Identities = 256/368 (70%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078
||||| || || ||||| | || ||||| || || |||||||| ||||| || | ||
Sbjct 47874 AAGATAGCAGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTG 47933
Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138
|| | || || ||||| || |||| || | | | || || | ||||| || ||
Sbjct 47934 TTTGGCTCCTTTCCGTTGAAGAAATCGGAGACGAGCTTCTGGATCCTGGGGATACGGGTA 47993
Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198
|| |||||||| | |||||||||| || |||||||||||||| | ||| || ||
Sbjct 47994 GAGCCACCGACAAGGACGATTTCATGGACGGAAGATTTATCGATCTTGGCGTCGCGGAGA 48053
Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258
|| || || ||||| |||||| | |||| || || ||||| |||||
Sbjct 48054 ACACGCTCAACGGGCTCCATGGTGGAACGGAAGAGGTCCTGGCAAAGCTCCTCGAAACGG 48113
Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318
|||||||| ||||| || |||||||||| || ||||| | || || |||||||| |
Sbjct 48114 GCACGGGTGATGGAGGTGTAGAAATCAATACCCTCGTACAGAGAGTCGATTTCAATAGAA 48173
Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378
|| || || | || || | || ||||| || ||||| || || || || | ||| ||
Sbjct 48174 GTCTGAGCAGCGGAGGAAAGGGTGCGCTTGGCACGCTCGCAGGCAGTGCGGAGACGGCGG 48233
Query 7379 AGGGCACG 7386
||||||||
Sbjct 48234 AGGGCACG 48241
>seq1026
Length=3903
Score = 129 bits (142), Expect = 7e-25
Identities = 259/382 (68%), Gaps = 3/382 (1%)
Strand=Plus/Minus
Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460
|| |||| || ||| |||| ||||||| |||||| ||||| | | || |
Sbjct 1886 TACCTTTTTTGGTTTTCCGTTGGAACTCTTTCTTGAAGTGGTCCAGGAGGTTGGTGTCAA 1827
Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520
| || | ||| |||||||| ||||| || ||||| || ||||| |||| || || |
Sbjct 1826 AGTCCTGACCTCCCAAGTGGGTATCACCGGCGGTAGCCTTGACGGTGAAGACGCCACCCT 1767
Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580
||||| | | |||||||| || || || || || || || ||||||| |||||
Sbjct 1766 GGATGTTGAGGAGGGAAACATCGAAAGTTCCTCCGCCAAGATCGTAAATGAGAACGTTAC 1707
Query 7581 TATCGTCGTCTTT--GTTCTTATCGA-GACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637
|| | || | | | | | ||||||| || ||||| || || || || ||||
Sbjct 1706 GCTCCTTCTCCGACCGGCCAGAGCCAAGACCGTAGGCAATAGCAGCGGCGGTAGGCTCAT 1647
Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697
| || ||||| || ||||| ||| ||||| | | || || || || ||||||| ||
Sbjct 1646 TGATGATACGGAGGACGTTCAAGCCCGCAATGGCACCGGCGTCCTTGGTTGCTTGTCTTT 1587
Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757
| ||| || ||||| || ||||| || || || || | ||||||||||| |||| |
Sbjct 1586 GGTTATCATTGAAGTATGCTGGGACAGTAACAACAGCTTTTGTGACTTTCTTGGCGAGTT 1527
Query 7758 ACGATTCCGCGATATCTTTCAT 7779
| ||||||| ||||||||
Sbjct 1526 TGGTCTCCGCGACTTCTTTCAT 1505
>seq134
Length=7744
Score = 116 bits (128), Expect = 5e-21
Identities = 397/614 (65%), Gaps = 15/614 (2%)
Strand=Plus/Minus
Query 105466 TATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGA 105525
|| || ||||||||| | |||||||| ||| || || || | | || || | |
Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCA 5120
Query 105526 TCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGA 105585
| || ||||| | | ||| | |||| ||||| || ||||| || | ||| ||
Sbjct 5119 TTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGT 5060
Query 105586 ATCCACATGGCT--GAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAAC 105643
|||| | ||| ||||||| || ||| || | ||||| | || || ||| ||
Sbjct 5059 GTCCAAAGAGCTAGGAAAAGA--TCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTAC 5002
Query 105644 GAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACC 105703
| | || | || |||| |||||| | |||||| ||||| | ||| | || | || |
Sbjct 5001 GGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTC 4942
Query 105704 C------TTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757
| |||| || ||| || | ||||||||| || || ||| | || || |
Sbjct 4941 CCGGCCGTTTATTACCTCCC---TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCA 4885
Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817
|||||||| || || | || | |||||||||||| ||| | || | |||
Sbjct 4884 GCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCAC 4825
Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACAC-TCT 105876
| | ||||| || | |||||||| ||||| ||| || ||||| |||
Sbjct 4824 GAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCT 4765
Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936
| || || ||||||||||| || ||||| || ||||| | | || ||||| |||||
Sbjct 4764 TCAAC-GTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAA 4706
Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAA 105996
| ||| || ||| || ||||| |||||||| || || || | ||||| |||| ||
Sbjct 4705 GCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAAT 4646
Query 105997 CCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCA 106056
|| || | | || ||||| | ||| | || | ||| | ||||||||| ||
Sbjct 4645 TTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCG 4586
Query 106057 ATAGCGACGCGCAT 106070
| ||| || |||||
Sbjct 4585 ACAGCAACACGCAT 4572
>seq179
Length=7536
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660
||||||||||| || | ||| || || ||||| ||||| | || ||| || ||| ||
Sbjct 1467 TCGAGACCGTAGGCAAGAGCAGCAGCAGTTGGCTCATTGACAACACGTAGCACGTTAAGA 1408
Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720
||||| || | ||||| || || ||||| ||||| ||||| || |||||||| |||
Sbjct 1407 CCAGCGATCTGACCAGCATCCTTGGTAGCTTGACGTTGAGAATCATTGAAGTAGGCGGGG 1348
Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780
|| || ||||| ||| | | || | |||||||| | ||| || | |||||||||
Sbjct 1347 ACAGTGACGACACCGTTCTTCACAGGTCTGCCGAGATAGGCTTCAGCAGTCTCTTTCATT 1288
Query 7781 TT 7782
||
Sbjct 1287 TT 1286
>seq768
Length=27437
Score = 87.8 bits (96), Expect = 2e-12
Identities = 192/285 (67%), Gaps = 2/285 (1%)
Strand=Plus/Plus
Query 184052 AGTCCCTTGATATGACTTCCATCGTTATCTGCATCGGTCATGATCATGAGTCTTCCGTAT 184111
|| ||||| ||||||||||| |||| ||| |||||||||||||||||| ||||||
Sbjct 5813 AGACCCTTAATATGACTTCCGTCGTGGTCTTGATCGGTCATGATCATGAGATGTCCGTAG 5872
Query 184112 CTGAGTTCGGAGAGTG-ATGTATACACTTTCCCTTGCTGAAGCCCCAAAATCTTTTTAAG 184170
| ||| | | ||| |||||| ||||| ||||| || || | | ||||| |
Sbjct 5873 CGGAGGCCCTTG-GTGTCGGTATACTCTTTCTTGTGCTGTAGTCCAAGGAAGTTTTTGAT 5931
Query 184171 ATCATTAAACTCCTTGTTTTCGGTAAGTTGTTTTACACTCGCGTCACGCACGTTCTTACA 184230
| | | ||| | |||| || | || | ||| ||||| || |||||
Sbjct 5932 GTTCTGGATTTCCGTATTTTTGGATATCTGATCAACAGAGGCGTCCCGGACGTTGAGCAG 5991
Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290
|| |||| || || || |||||| | ||||| | ||||||| | |||| || ||
Sbjct 5992 CTTTCCCCGTAGAGGGAATACACCGAAGAGATCAGGCCCAACAATAGCTCGACCGGCCAT 6051
Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACA 184335
|| | | ||||||||||| ||||| || | ||||| |||||
Sbjct 6052 GGCTAATCCCTTTGCAGAATCTCCTTCAGTCAGGATAAGGGTACA 6096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635097518372960
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