Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq302 111 2e-19 seq134 107 2e-18 >seq302 Length=30871 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 102165 |||| || || || | |||||||| |||||||| || ||| |||| |||| ||| Sbjct 11709 CAGTCCCCTGCATCCGCAAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGT 11650 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | ||||||| |||| || |||| || || |||||| || ||||||||| | Sbjct 11649 C---TACCTTTGCGCAGCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCG 11593 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | |||||| | || | ||||| ||||| || ||||| ||||| ||||| || | Sbjct 11592 GATCCTTCGCTTCAATCTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTT 11533 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | ||||||||||| |||||||||||||| | ||| || ||||| Sbjct 11532 CTAACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTTGC 11487 >seq134 Length=7744 Score = 107 bits (118), Expect = 2e-18 Identities = 463/716 (65%), Gaps = 12/716 (2%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | |||||||| | ||||||| |||||||||| || | |||||||||||| ||| Sbjct 5296 TGGTATGCTATTCTTGAAGCTCAAACTGAGACTGGTAACCCCTTTATGCTTTACAAGGAC 5355 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 || || ||| | ||||| || || ||||| | || || | || || ||||| || Sbjct 5356 GCTTGCAACGAGAAGAGCAACCAGAAGAACCTAGGCACAATTAGAAGCTCTAACCTGTGC 5415 Query 112398 ACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 112456 || || ||| | || | || | | ||||||| || ||||| ||| | || || || Sbjct 5416 ACCGAGATCATTGAGTATTGCTCGC-CAGATGAGGTTGCAGTGTGCAACTTGGCGTCTAT 5474 Query 112457 CGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGATTATGAAAAACTCCACG 112515 ||| | || | | |||||||| | || | | | | ||||| | || ||||| | Sbjct 5475 TGCTTTGCCTACCTTCGTGGATCCTG-TACGAGGGGAGTATGATTTCGGCAAGCTCCATG 5533 Query 112516 AAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 112575 |||| || || |||| ||||| |||| | || ||| | || | || || | Sbjct 5534 AAGTAACTCAAGTTGTCGTTCGTAACCTTAACAAGATCATCGATCGGAACTACTATCCGG 5593 Query 112576 TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTC 112635 | ||| || | | || | | || || || |||| | ||||||||| || | Sbjct 5594 TCGAGGAAGCAAGACGAAGCAACTTCCGTCATCGCCCCATTGCTTGCGGTGTCCAGGGCC 5653 Query 112636 TCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATC 112694 | || |||| ||| || || || || | |||||||||| || || ||| | Sbjct 5654 TTGCTGATGCCTTCCTTGCTCTG-CGGCTTCCATTTGATTCACCTGAGGCTAAGCTCTTA 5712 Query 112695 AATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA-GGCGAGTTCGGAGTTGGC 112753 || | || || || ||||| || |||| || |||| ||| | ||| |||| Sbjct 5713 AACATTCAAATTTTCGAAACAATTTACCACG-CGAGTTTGACTGCGTCCTGTGAGCTGGC 5771 Query 112754 AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCA 112813 | |||| || |||||| || | ||| || || || | || || || | ||||| Sbjct 5772 TAAAATTGACGGCCCATATTCCACGTATGAAGGCTCCCCCGTCTCTCAGGGTATCCTTCA 5831 Query 112814 ATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTCTCAAGGAAC 112872 || |||||||| |||| |||| || | | | || || |||||| | || || || Sbjct 5832 ATATGATATGT-GGAAAGTGACCCCCACCGACCTCTGGGATTGGGACTCGCTGAAACAAG 5890 Query 112873 GCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCA 112932 || || | || | ||||| ||| | | | || || ||||| || ||| || Sbjct 5891 ATATTGCTAAGCATGGAGTGCGTAATAGTTTGCTTGTTGCGCCCATGCCGACTGCCAGCA 5950 Query 112933 CC-GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 || || | |||||||| || ||||||||||| || ||||| | |||||||| Sbjct 5951 CCAGCCAGATTCTTGGGT-TCAACGAATGCTTTGAGCCATACACCTCTAACATCTA 6005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620707917759680