Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq302 111 2e-19
seq134 107 2e-18
>seq302
Length=30871
Score = 111 bits (122), Expect = 2e-19
Identities = 162/226 (72%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 102165
|||| || || || | |||||||| |||||||| || ||| |||| |||| |||
Sbjct 11709 CAGTCCCCTGCATCCGCAAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGT 11650
Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225
| | ||||||| |||| || |||| || || |||||| || ||||||||| |
Sbjct 11649 C---TACCTTTGCGCAGCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCG 11593
Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285
| |||||| | || | ||||| ||||| || ||||| ||||| ||||| || |
Sbjct 11592 GATCCTTCGCTTCAATCTTCTGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTT 11533
Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
| ||||||||||| |||||||||||||| | ||| || |||||
Sbjct 11532 CTAACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTTGC 11487
>seq134
Length=7744
Score = 107 bits (118), Expect = 2e-18
Identities = 463/716 (65%), Gaps = 12/716 (2%)
Strand=Plus/Plus
Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337
||| | |||||||| | ||||||| |||||||||| || | |||||||||||| |||
Sbjct 5296 TGGTATGCTATTCTTGAAGCTCAAACTGAGACTGGTAACCCCTTTATGCTTTACAAGGAC 5355
Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397
|| || ||| | ||||| || || ||||| | || || | || || ||||| ||
Sbjct 5356 GCTTGCAACGAGAAGAGCAACCAGAAGAACCTAGGCACAATTAGAAGCTCTAACCTGTGC 5415
Query 112398 ACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 112456
|| || ||| | || | || | | ||||||| || ||||| ||| | || || ||
Sbjct 5416 ACCGAGATCATTGAGTATTGCTCGC-CAGATGAGGTTGCAGTGTGCAACTTGGCGTCTAT 5474
Query 112457 CGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGATTATGAAAAACTCCACG 112515
||| | || | | |||||||| | || | | | | ||||| | || ||||| |
Sbjct 5475 TGCTTTGCCTACCTTCGTGGATCCTG-TACGAGGGGAGTATGATTTCGGCAAGCTCCATG 5533
Query 112516 AAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 112575
|||| || || |||| ||||| |||| | || ||| | || | || || |
Sbjct 5534 AAGTAACTCAAGTTGTCGTTCGTAACCTTAACAAGATCATCGATCGGAACTACTATCCGG 5593
Query 112576 TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTC 112635
| ||| || | | || | | || || || |||| | ||||||||| || |
Sbjct 5594 TCGAGGAAGCAAGACGAAGCAACTTCCGTCATCGCCCCATTGCTTGCGGTGTCCAGGGCC 5653
Query 112636 TCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATC 112694
| || |||| ||| || || || || | |||||||||| || || ||| |
Sbjct 5654 TTGCTGATGCCTTCCTTGCTCTG-CGGCTTCCATTTGATTCACCTGAGGCTAAGCTCTTA 5712
Query 112695 AATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA-GGCGAGTTCGGAGTTGGC 112753
|| | || || || ||||| || |||| || |||| ||| | ||| ||||
Sbjct 5713 AACATTCAAATTTTCGAAACAATTTACCACG-CGAGTTTGACTGCGTCCTGTGAGCTGGC 5771
Query 112754 AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCA 112813
| |||| || |||||| || | ||| || || || | || || || | |||||
Sbjct 5772 TAAAATTGACGGCCCATATTCCACGTATGAAGGCTCCCCCGTCTCTCAGGGTATCCTTCA 5831
Query 112814 ATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTCTCAAGGAAC 112872
|| |||||||| |||| |||| || | | | || || |||||| | || || ||
Sbjct 5832 ATATGATATGT-GGAAAGTGACCCCCACCGACCTCTGGGATTGGGACTCGCTGAAACAAG 5890
Query 112873 GCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCA 112932
|| || | || | ||||| ||| | | | || || ||||| || ||| ||
Sbjct 5891 ATATTGCTAAGCATGGAGTGCGTAATAGTTTGCTTGTTGCGCCCATGCCGACTGCCAGCA 5950
Query 112933 CC-GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987
|| || | |||||||| || ||||||||||| || ||||| | ||||||||
Sbjct 5951 CCAGCCAGATTCTTGGGT-TCAACGAATGCTTTGAGCCATACACCTCTAACATCTA 6005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620707917759680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |