Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq134 165 1e-35 seq3947 123 3e-23 seq340 96.9 4e-15 >seq134 Length=7744 Score = 165 bits (182), Expect = 1e-35 Identities = 430/650 (66%), Gaps = 7/650 (1%) Strand=Plus/Minus Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 ||| || ||||| | ||| | ||| | |||||| | |||||| || || ||||| | Sbjct 5117 GGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGT 5058 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||| | || |||||| ||||| ||| | ||||| | || ||||| || || Sbjct 5057 CCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAG 4998 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTT 110756 ||||| || || | ||||| | |||||| ||||||||||| | ||||| | |||| Sbjct 4997 GTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGG 4938 Query 110757 ACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813 || | ||| |||||| ||||| | || ||| ||||| || | ||||| || Sbjct 4937 CCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGG 4878 Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873 || ||||| | || |||||||| || ||| || || |||||||| Sbjct 4877 AACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCG 4818 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTG 110932 ||| || | | |||||||||||| || ||| ||| |||| | ||| | | | Sbjct 4817 GTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCT-TCAACG 4759 Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992 | | |||||||| ||||| || |||| || | || || ||||| |||| ||||| Sbjct 4758 TGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCT 4699 Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGG 111052 |||| | || || || |||||||| || ||||| | ||||| |||| | ||| | Sbjct 4698 GAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAG 4639 Query 111053 ACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAA 111112 |||| ||| || || |||| | |||||| | || ||||| || | |||| Sbjct 4638 ACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAA 4579 Query 111113 CTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATCAACACGCTGAAGGTAA 111171 | ||||||| ||| | |||||| ||| | | |||| || | | || | | ||| Sbjct 4578 CACGCATGATCATGTGTTGAGGGCGTTC-AGCAACTTTGCCGTTGATTCGAAGCAAATAA 4520 Query 111172 CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 | |||||| ||||||| || |||||| | ||| ||| |||||||| Sbjct 4519 GACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAATTGAAGTCACGATC 4470 >seq3947 Length=14563 Score = 123 bits (136), Expect = 3e-23 Identities = 338/508 (67%), Gaps = 31/508 (6%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 || || || || || || || || || | |||||| ||||| || || || || | || Sbjct 7384 TCAAATCGGCCAGGTCGCAGCAGGGCCTTATCAAGGATATCAACCCGATTCGTTCCAGCC 7325 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| || | | || ||| ||| ||| ||||||||||| ||||||| ||| || Sbjct 7324 AGGACAACGA--CTTGT-TCAGAAGTGTTGAAGCCGTCCATTTCCGTGAGAATCTGATTC 7268 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT-ACCACCTGC------CGAACGCTTCTT 11675 | ||| ||| ||||| ||||| || |||| || ||| | | || Sbjct 7267 AGCGTGCTTTCCCGCTCGTCGTTTC----CACCACCATAAGCGTTTTTCGATCTCGATTT 7212 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 || | ||| ||||||||||||||||||| ||||| ||| ||| || || |||| Sbjct 7211 TCCAATAGCATCAATCTCATCGATGAATATAATACAGGGTGTGTTTTTGCGGGC-TGTTG 7153 Query 11736 GAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||| || ||||| || || | ||||||||| || ||||| || ||||| | Sbjct 7152 CAAATAGATCACGAACTCGGGAGGGTCCAACACCAACAAACATTTCCACGAATT------ 7099 Query 11795 CAGAAC-ACTGA----ATGAAG-GGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 |||||| ||| | || || |||||| |||||| ||||| | ||| || || | Sbjct 7098 CAGAACCACTCACGCTATAAAACGGAACACCAGACTCGCCAGCTGTAGCTTTGGCCAGTA 7039 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908 |||||||| ||||| |||| |||| || | ||||| ||||||||||| |||||| Sbjct 7038 ATGTCTTACCGGTACCCGGTGGTCCAGAAAGGATAGCGCCTCGGGGGATCTTAGCACCAA 6979 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968 | | | |||| || ||||| || ||| |||| ||| || ||| | |||| Sbjct 6978 GCCGTTGGAATTGCTCTGGTTTCTTTAGAAAGCTGACAAATTCCATAATCTCCACTTTGG 6919 Query 11969 CGGAGTCGATACCCTCAACATCGGTGAA 11996 | ||| || || | ||||| | ||| Sbjct 6918 CTTCGTCCATGCCGGCCACATCAGCGAA 6891 >seq340 Length=6613 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 1225 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 1166 Query 136776 TGGGAACA 136783 ||||| || Sbjct 1165 TGGGACCA 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588943282383200