Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq134 165 1e-35
seq3947 123 3e-23
seq340 96.9 4e-15
>seq134
Length=7744
Score = 165 bits (182), Expect = 1e-35
Identities = 430/650 (66%), Gaps = 7/650 (1%)
Strand=Plus/Minus
Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636
||| || ||||| | ||| | ||| | |||||| | |||||| || || ||||| |
Sbjct 5117 GGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGT 5058
Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696
||| | || |||||| ||||| ||| | ||||| | || ||||| || ||
Sbjct 5057 CCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAG 4998
Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTT 110756
||||| || || | ||||| | |||||| ||||||||||| | ||||| | ||||
Sbjct 4997 GTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGG 4938
Query 110757 ACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813
|| | ||| |||||| ||||| | || ||| ||||| || | ||||| ||
Sbjct 4937 CCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGG 4878
Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873
|| ||||| | || |||||||| || ||| || || ||||||||
Sbjct 4877 AACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCG 4818
Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTG 110932
||| || | | |||||||||||| || ||| ||| |||| | ||| | | |
Sbjct 4817 GTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCT-TCAACG 4759
Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992
| | |||||||| ||||| || |||| || | || || ||||| |||| |||||
Sbjct 4758 TGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCT 4699
Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGG 111052
|||| | || || || |||||||| || ||||| | ||||| |||| | ||| |
Sbjct 4698 GAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAG 4639
Query 111053 ACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAA 111112
|||| ||| || || |||| | |||||| | || ||||| || | ||||
Sbjct 4638 ACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAA 4579
Query 111113 CTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATCAACACGCTGAAGGTAA 111171
| ||||||| ||| | |||||| ||| | | |||| || | | || | | |||
Sbjct 4578 CACGCATGATCATGTGTTGAGGGCGTTC-AGCAACTTTGCCGTTGATTCGAAGCAAATAA 4520
Query 111172 CTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221
| |||||| ||||||| || |||||| | ||| ||| ||||||||
Sbjct 4519 GACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAATTGAAGTCACGATC 4470
>seq3947
Length=14563
Score = 123 bits (136), Expect = 3e-23
Identities = 338/508 (67%), Gaps = 31/508 (6%)
Strand=Plus/Minus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|| || || || || || || || || | |||||| ||||| || || || || | ||
Sbjct 7384 TCAAATCGGCCAGGTCGCAGCAGGGCCTTATCAAGGATATCAACCCGATTCGTTCCAGCC 7325
Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| ||| || | | || ||| ||| ||| ||||||||||| ||||||| ||| ||
Sbjct 7324 AGGACAACGA--CTTGT-TCAGAAGTGTTGAAGCCGTCCATTTCCGTGAGAATCTGATTC 7268
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT-ACCACCTGC------CGAACGCTTCTT 11675
| ||| ||| ||||| ||||| || |||| || ||| | | ||
Sbjct 7267 AGCGTGCTTTCCCGCTCGTCGTTTC----CACCACCATAAGCGTTTTTCGATCTCGATTT 7212
Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735
|| | ||| ||||||||||||||||||| ||||| ||| ||| || || ||||
Sbjct 7211 TCCAATAGCATCAATCTCATCGATGAATATAATACAGGGTGTGTTTTTGCGGGC-TGTTG 7153
Query 11736 GAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
||| || ||||| || || | ||||||||| || ||||| || ||||| |
Sbjct 7152 CAAATAGATCACGAACTCGGGAGGGTCCAACACCAACAAACATTTCCACGAATT------ 7099
Query 11795 CAGAAC-ACTGA----ATGAAG-GGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848
|||||| ||| | || || |||||| |||||| ||||| | ||| || || |
Sbjct 7098 CAGAACCACTCACGCTATAAAACGGAACACCAGACTCGCCAGCTGTAGCTTTGGCCAGTA 7039
Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908
|||||||| ||||| |||| |||| || | ||||| ||||||||||| ||||||
Sbjct 7038 ATGTCTTACCGGTACCCGGTGGTCCAGAAAGGATAGCGCCTCGGGGGATCTTAGCACCAA 6979
Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968
| | | |||| || ||||| || ||| |||| ||| || ||| | ||||
Sbjct 6978 GCCGTTGGAATTGCTCTGGTTTCTTTAGAAAGCTGACAAATTCCATAATCTCCACTTTGG 6919
Query 11969 CGGAGTCGATACCCTCAACATCGGTGAA 11996
| ||| || || | ||||| | |||
Sbjct 6918 CTTCGTCCATGCCGGCCACATCAGCGAA 6891
>seq340
Length=6613
Score = 96.9 bits (106), Expect = 4e-15
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 1225 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 1166
Query 136776 TGGGAACA 136783
||||| ||
Sbjct 1165 TGGGACCA 1158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588943282383200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |