Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq819 179 8e-40 seq134 84.2 5e-11 >seq819 Length=4427 Score = 179 bits (198), Expect = 8e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||||| |||||||| |||||||| |||| ||||||| || || || Sbjct 2016 ACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCA 1957 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || |||||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 1956 AGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGG 1897 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || ||||| || ||||| || || ||||| |||||||| |||| || || Sbjct 1896 ATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTG 1837 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | ||||| Sbjct 1836 CCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | || |||||| ||| || ||||| ||||| || | ||| |||| || Sbjct 2251 TCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACC 2192 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| ||||| ||||| || ||||||||||| || || ||||| || || ||||| || Sbjct 2191 ATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTT 2132 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| ||||| || ||||| ||||| ||||| || || || || || || || | Sbjct 2131 GTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGAT 2072 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || |||| |||||| ||||| | ||||| Sbjct 2071 GGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || || || |||||||| || || ||||| | |||| || | |||||||| Sbjct 1788 ACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAG-GTGCGGCCATCTTC 1730 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || ||||| || || || || || |||||||| || || Sbjct 1729 GAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTG 1670 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||| ||||| || ||||| || ||| |||||| || | ||| | ||||| Sbjct 1669 GATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTT 1610 Query 195111 TCCTGTCAAAGTTTTTAC 195128 || || | ||||| || Sbjct 1609 GCCAGTGAGGGTTTTCAC 1592 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || || ||||| || || ||||||||||||| || || | || || || Sbjct 1455 AACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAGGGTACGACCGTCCTC 1396 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||||||||| || |||||||| ||||| || || || |||||||| Sbjct 1395 AAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTCTTG 1336 Query 195051 AATTTT 195056 |||||| Sbjct 1335 AATTTT 1330 >seq134 Length=7744 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 160601 TGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGT 160660 ||||| | ||||| || |||||| | || | | ||||| || |||| || || || Sbjct 5055 TGGACACCTGATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGC 5114 Query 160661 CCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAA 160720 |||||||||||||| || | | ||||| |||||| ||||||| ||| ||||||| ||| Sbjct 5115 CCCAATGAAGCGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACGAA 5174 Query 160721 A 160721 | Sbjct 5175 A 5175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109418427504548