Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq134 131 2e-25
seq302 91.5 2e-13
>seq134
Length=7744
Score = 131 bits (144), Expect = 2e-25
Identities = 402/622 (65%), Gaps = 0/622 (0%)
Strand=Plus/Minus
Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184
|||||| || | ||||| |||| | || || || |||||| || || | | |
Sbjct 5162 CTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGT 5103
Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244
||| || ||| || | || | ||||||| | ||| ||| |||||||||||| ||
Sbjct 5102 CCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAA 5043
Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
| ||| | || | | |||||| || || ||| | || || | || || |
Sbjct 5042 AAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAA 4983
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
||||||| ||||| ||||| | ||| || || | | || || ||||||||||||||
Sbjct 4982 AATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCC 4923
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
|| || | |||||| ||||| ||||| |||| | | |||||| || || || |||||
Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863
Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484
||||| ||||| | ||| ||| || | | | || ||| | |||
Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACC 4803
Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544
|||||||| || | || || || | ||||| || | || || ||||| || ||
Sbjct 4802 AATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTC 4743
Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604
||||| || || |||| | | || || || || ||| || || || || ||
Sbjct 4742 AATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACC 4683
Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664
| ||| || | || ||||| ||||| | || |||| | || | | ||||| ||
Sbjct 4682 GGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGT 4623
Query 48665 TTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATA 48724
||| || || |||| ||| | ||| || || | || |||||||| | ||| |
Sbjct 4622 TTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTG 4563
Query 48725 TTGAGGTCTTTCAACAATTTTG 48746
|||||| | |||| ||| ||||
Sbjct 4562 TTGAGGGCGTTCAGCAACTTTG 4541
Score = 82.4 bits (90), Expect = 9e-11
Identities = 200/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Minus
Query 46971 TCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATA 47030
|||| ||||| ||||||| ||||||| || | |||| || | ||| |||||
Sbjct 6395 TCTTGGTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATT 6336
Query 47031 CCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAAC-T 47089
|| || || | ||| | |||| || ||||||||| || || ||||| | | |
Sbjct 6335 CCGGTTTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGT-AATTTTGCCCATGGT 6277
Query 47090 AGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGC 47149
|| || | ||| ||||| ||||| || || || ||||||||||||| ||||||
Sbjct 6276 CGGCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGC 6217
Query 47150 TGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209
||||| | | ||| | || | ||| ||||| || || ||||| | ||| ||
Sbjct 6216 AGCCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGAT 6157
Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCGTTTTCTATAATTTTGTTTTT 47266
|| | ||||| || | | || |||||||| ||||||| | ||||| ||||||
Sbjct 6156 ATCCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTT 6097
>seq302
Length=30871
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||| ||||||||| |||| |||||||| | | || | || |||||||| || |
Sbjct 11483 ACAGGCAAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAG 11542
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
||||||||| || || | ||| || | |||||| || ||||| || ||||| |||||
Sbjct 11543 ACCAGGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAA 11602
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| ||||| || || || || || || || | | || | ||| || || | |
Sbjct 11603 GATGCCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGGTAGACTCCTTGTCTTC 11662
Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTT 19169
||||||| | ||||||||||| |||||
Sbjct 11663 AATCCATCGGATGGCCCAATCAGCTTTCTT 11692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562077574856160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |