Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq134 131 2e-25 seq302 91.5 2e-13 >seq134 Length=7744 Score = 131 bits (144), Expect = 2e-25 Identities = 402/622 (65%), Gaps = 0/622 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || | ||||| |||| | || || || |||||| || || | | | Sbjct 5162 CTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGT 5103 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || ||| || | || | ||||||| | ||| ||| |||||||||||| || Sbjct 5102 CCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAA 5043 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | || | | |||||| || || ||| | || || | || || | Sbjct 5042 AAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAA 4983 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 ||||||| ||||| ||||| | ||| || || | | || || |||||||||||||| Sbjct 4982 AATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCC 4923 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | |||||| ||||| ||||| |||| | | |||||| || || || ||||| Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 ||||| ||||| | ||| ||| || | | | || ||| | ||| Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACC 4803 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| || | || || || | ||||| || | || || ||||| || || Sbjct 4802 AATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTC 4743 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 ||||| || || |||| | | || || || || ||| || || || || || Sbjct 4742 AATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACC 4683 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | ||| || | || ||||| ||||| | || |||| | || | | ||||| || Sbjct 4682 GGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGT 4623 Query 48665 TTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATA 48724 ||| || || |||| ||| | ||| || || | || |||||||| | ||| | Sbjct 4622 TTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTG 4563 Query 48725 TTGAGGTCTTTCAACAATTTTG 48746 |||||| | |||| ||| |||| Sbjct 4562 TTGAGGGCGTTCAGCAACTTTG 4541 Score = 82.4 bits (90), Expect = 9e-11 Identities = 200/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 46971 TCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATA 47030 |||| ||||| ||||||| ||||||| || | |||| || | ||| ||||| Sbjct 6395 TCTTGGTCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATT 6336 Query 47031 CCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAAC-T 47089 || || || | ||| | |||| || ||||||||| || || ||||| | | | Sbjct 6335 CCGGTTTTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGT-AATTTTGCCCATGGT 6277 Query 47090 AGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGC 47149 || || | ||| ||||| ||||| || || || ||||||||||||| |||||| Sbjct 6276 CGGCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGC 6217 Query 47150 TGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 ||||| | | ||| | || | ||| ||||| || || ||||| | ||| || Sbjct 6216 AGCCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGAT 6157 Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCGTTTTCTATAATTTTGTTTTT 47266 || | ||||| || | | || |||||||| ||||||| | ||||| |||||| Sbjct 6156 ATCCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTT 6097 >seq302 Length=30871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||| |||| |||||||| | | || | || |||||||| || | Sbjct 11483 ACAGGCAAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAG 11542 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||||||||| || || | ||| || | |||||| || ||||| || ||||| ||||| Sbjct 11543 ACCAGGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAA 11602 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || ||||| || || || || || || || | | || | ||| || || | | Sbjct 11603 GATGCCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGGTAGACTCCTTGTCTTC 11662 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 ||||||| | ||||||||||| ||||| Sbjct 11663 AATCCATCGGATGGCCCAATCAGCTTTCTT 11692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562077574856160