Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq819 114 1e-19 seq179 109 4e-18 >seq819 Length=4427 Score = 114 bits (126), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || ||||| ||||| || |||||| |||||||| || | ||||||| Sbjct 2025 AGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGG 1966 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || ||||| |||||||| || || ||||||| |||||| || || || || || ||| Sbjct 1965 CCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCT 1906 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435 |||||||| ||||| ||| || || || ||||| | | | || ||| ||||| Sbjct 1905 TTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGAC-TTCAAGAGT 1847 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || |||||| || ||||| || || ||||| || |||||| Sbjct 1846 AATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCATA 1807 >seq179 Length=7536 Score = 109 bits (120), Expect = 4e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || ||||| || |||||||||||||| || |||||||| | || Sbjct 1343 ACTGTCCCCGCCTACTTCAATGATTCTCAACGTCAAGCTACCAAGGATGCTGGTCAGATC 1402 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| ||||| || || ||| || ||||||| || ||||||||||| ||||| || || Sbjct 1403 GCTGGTCTTAACGTGCTACGTGTTGTCAATGAGCCAACTGCTGCTGCTCTTGCCTACGGT 1462 Query 550529 CTTGA 550533 || || Sbjct 1463 CTCGA 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029060981237560