Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_018853.1 Length=40474 Score E Sequences producing significant alignments: (Bits) Value seq3890 93.3 1e-14 >seq3890 Length=67644 Score = 93.3 bits (102), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 16364 GTTCCCCGGAGCGGCTTTCTTCAAGCGTGAGCCGAAGT-CGGCGATCGTTACGGCCATGG 16422 ||||||||| || | | ||| | || |||| ||| | || ||| | || || |||| Sbjct 11867 GTTCCCCGGCGCCTCGTGGTTCCATCGCAAGCCAAAGAGCAGC-ATCATCACTGCGATGG 11925 Query 16423 GTAAGCGGCTGGTCGCCGTTGGGTGCTCCGCTTACAAGTCGGGTCCGGGTCCCCAGTGGA 16482 ||||| | |||| || | || ||| ||| || ||| || || || |||||||||| Sbjct 11926 GTAAGAGATTGGTTGCGGAGGGTTGCAGCGCATATAAGGAAGGGCCAGGCCCCCAGTGGA 11985 Query 16483 CCGACGCCGACCGTGCGTCGTACGCGAAGTGGCAGCGGAAGCGCGGGTACTCCGGCGCGG 16542 | || || |||||||| |||||| ||||||||||| ||| || | | ||| || Sbjct 11986 CTGATGCGGACCGTGCATCGTACAAGAAGTGGCAGCAGAAATTAGGATTCAGCGGTAAGG 12045 Query 16543 ACGCTGACGGCTGGCCGGGTAAGGCGTCTTGGGACGCGCTGAAGGTCCCGAAG 16595 | || || || ||||| || ||| | |||||| |||||||| | |||| Sbjct 12046 ATGCCGATGGGTGGCCCGGGAAGACAAGTTGGGATAAACTGAAGGTTCGGAAG 12098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129388371491808