Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq302 125 1e-23 >seq302 Length=30871 Score = 125 bits (138), Expect = 1e-23 Identities = 341/518 (66%), Gaps = 13/518 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | || || |||||||| || || || ||| |||||||| || Sbjct 11195 CTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATC 11254 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| || ||||||| | ||| || || | ||| ||||| | || Sbjct 11255 CATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTT--GCCCAAAGCAACGAGG 11312 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| |||| |||||| |||| ||||||| ||||||| || |||||| || | || Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGC 11372 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | || || | || | || ||| ||||||| ||| || || ||||| | ||| Sbjct 11373 GCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432 Query 48077 TGCTTAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || || | |||| | || || |||| ||| | | |||| | ||| Sbjct 11433 CTCTCGACA---GCCTCTTGGCTAGGACGGTGACGCAAGTGA---GAAAAGAGGAGACAG 11486 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || |||| ||||| ||||| || || ||| |||| || || |||||| Sbjct 11487 GCAAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCA 11546 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | || |||||||| |||| ||||| || || |||||||||| Sbjct 11547 GGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATG 11606 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || || || ||||| ||| || | || | || | || | ||||||| ||| Sbjct 11607 CCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGGTAGACTCCTTGTCTTCAATC 11666 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || | ||||| || || ||||| |||||| || Sbjct 11667 CATCGGATGGCCCAATCAGCTTTCTTGCGGATGCAGGG 11704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931481053352960