Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq302 145 1e-29 >seq302 Length=30871 Score = 145 bits (160), Expect = 1e-29 Identities = 308/460 (67%), Gaps = 9/460 (2%) Strand=Plus/Minus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| |||| |||| || || ||||| |||||||| || |||||||| |||||||| | Sbjct 11649 CTACCTTTGCGCAGCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGAT 11590 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTTC 25982 | || || | ||||||||||| ||| | | | || | ||||| || || ||| ||||| Sbjct 11589 CCTTCGCTTCAATCTTCTGGCTGAAGAA-ACGCGGTCTTATGCCTGGTCT-TACGTTTTC 11532 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||||| || | |||||||| | |||| ||||||||||| || |||| | Sbjct 11531 TAACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTC 11472 Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGT 26102 ||||||| ||| ||| |||||| | ||| | || ||||||| || ||||| Sbjct 11471 ---TCACTTGCGTCACCGTCCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGT 11415 Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162 |||||| ||||||| | | || |||||| Sbjct 11414 CACTATCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCGCTTCTCGGAATGAACGC 11355 Query 26163 CAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGAC 26221 || |||||| ||||||||||||||| || || || | || || || | |||| Sbjct 11354 CAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCGTTGC-TTTGGGCA 11296 Query 26222 TCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281 | | | |||||| | | ||||| || ||||| ||||| ||||| || ||| || Sbjct 11295 ACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAG 11236 Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | || ||||||||||| ||||| | || || ||||| || Sbjct 11235 GTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCA 11196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928793202671360