Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq302 145 1e-29
>seq302
Length=30871
Score = 145 bits (160), Expect = 1e-29
Identities = 308/460 (67%), Gaps = 9/460 (2%)
Strand=Plus/Minus
Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924
|||| |||| |||| || || ||||| |||||||| || |||||||| |||||||| |
Sbjct 11649 CTACCTTTGCGCAGCGTCTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGAT 11590
Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTTC 25982
| || || | ||||||||||| ||| | | | || | ||||| || || ||| |||||
Sbjct 11589 CCTTCGCTTCAATCTTCTGGCTGAAGAA-ACGCGGTCTTATGCCTGGTCT-TACGTTTTC 11532
Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042
|||||||| || | |||||||| | |||| ||||||||||| || |||| |
Sbjct 11531 TAACGAGCTTATTTCTCGTGACGAGGGCTTACACACTGATTTTGCCTGTCTCCTCTTTTC 11472
Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGT 26102
||||||| ||| ||| |||||| | ||| | || ||||||| || |||||
Sbjct 11471 ---TCACTTGCGTCACCGTCCTAGCCAAGAGGCTGTCGAGAGGATCATCACTGAAGCTGT 11415
Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162
|||||| ||||||| | | || ||||||
Sbjct 11414 CACTATCGAGCAGGAGTTCCTCTCAGATGCGCTCCCAGTCGCGCTTCTCGGAATGAACGC 11355
Query 26163 CAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGAC 26221
|| |||||| ||||||||||||||| || || || | || || || | ||||
Sbjct 11354 CAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTCCTCGTTGC-TTTGGGCA 11296
Query 26222 TCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAG 26281
| | | |||||| | | ||||| || ||||| ||||| ||||| || ||| ||
Sbjct 11295 ACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGATAACATCTCCCTGGCAG 11236
Query 26282 GGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
| || ||||||||||| ||||| | || || ||||| ||
Sbjct 11235 GTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCA 11196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928793202671360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |