Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq819 102 5e-16 seq179 95.1 8e-14 >seq819 Length=4427 Score = 102 bits (112), Expect = 5e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || ||||| |||||||| |||||| | ||| || || | ||||| Sbjct 2029 ACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGT 1970 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||| || ||||| || || ||||| ||||| || || || || || || Sbjct 1969 TCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACC 1910 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 || || ||||| || || ||| || || || ||||| | | | |||||| Sbjct 1909 CTCTTTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAG 1850 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| ||||| || ||||| ||||| || || Sbjct 1849 AGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTG 1811 >seq179 Length=7536 Score = 95.1 bits (104), Expect = 8e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || |||||||||||||||||||| || || ||||| || || Sbjct 1343 ACTGTCCCCGCCTACTTCAATGATTCTCAACGTCAAGCTACCAAGGATGCTGGTCAGATC 1402 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||| || ||||| || | ||||| ||||| || || || ||||| || ||| Sbjct 1403 GCTGGTCTTAACGTGCTACGTGTTGTCAATGAGCCAACTGCTGCTGCTCTTGCCTACGGT 1462 Query 474866 CTTGA 474870 || || Sbjct 1463 CTCGA 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267988575277712