Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 107 2e-18
seq134 102 1e-16
>seq3947
Length=14563
Score = 107 bits (118), Expect = 2e-18
Identities = 277/415 (67%), Gaps = 23/415 (6%)
Strand=Plus/Plus
Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334
|||||| ||||||||||||||||| | || | || || ||||| || ||||| |
Sbjct 6980 TGGTGCTAAGATCCCCCGAGGCGCTATCCTTTCTGGACCACCGGGTACCGGTAAGACATT 7039
Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC-ATCCAGTGCTCTGCCGCAA 175393
|| ||| ||| | || || || || ||| || || || ||| || |
Sbjct 7040 ACTGGCCAAAGCTACAGCTGGCGAGTCTGGTGTTCCGTTTTATAGCGTGAG-TGGTTCTG 7098
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| || ||||| |||||||||||||| || || | ||||| ||||| |||| || |
Sbjct 7099 AATTCGTGGAAATGTTTGTTGGTGTTGGACCCTCCCGAGTTCGTGATCTATTTGCAACAG 7158
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAA----G 175509
||||| |||| ||| |||||| | ||||| |||||||||||||| | || ||
Sbjct 7159 CCCGCAAAAACACACCCTGTATTATATTCATCGATGAGATTGATGCTATTGGAAAATCGA 7218
Query 175510 CAACG--CAGCGC---TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATC 175564
| || | ||| ||||||| | ||| |||||| | ||| || | ||||
Sbjct 7219 GATCGAAAAACGCTTATGGTGGT------GGAAACGACGAGCGGGAAAGCACGCTGAATC 7272
Query 175565 AACTACTCACCGAGATGGATGGCTTTGACA---ATGAGACTGGCATTGTGGTTATTGCGG 175621
| | ||||| || ||||| ||||| ||| ||| || | | || || | || |
Sbjct 7273 AGATTCTCACGGAAATGGACGGCTTCAACACTTCTGA-ACAAG--TCGTTGTCCTGGCTG 7329
Query 175622 CCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676
|| ||||| || |||||||||||| | ||||| || || || || || |||||
Sbjct 7330 GAACGAATCGGGTTGATATCCTTGATAAGGCCCTGCTGCGACCTGGCCGATTTGA 7384
>seq134
Length=7744
Score = 102 bits (112), Expect = 1e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935
||||| | |||||||| || | || || |||||||| | || | ||||||||||||||
Sbjct 5294 TTTGGTATGCTATTCTTGAAGCTCAAACTGAGACTGGTAACCCCTTTATGCTTTACAAGG 5353
Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995
| ||||| ||| ||||||| ||||| ||||| | || ||||| | ||||| || || |
Sbjct 5354 ACGCTTGCAACGAGAAGAGCAACCAGAAGAACCTAGGCACAATTAGAAGCTCTAACCTGT 5413
Query 75996 GCACGGAAATTTTAGAGTA 76014
|||| || || | |||||
Sbjct 5414 GCACCGAGATCATTGAGTA 5432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596536460558720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |