Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3947 107 2e-18 seq134 102 1e-16 >seq3947 Length=14563 Score = 107 bits (118), Expect = 2e-18 Identities = 277/415 (67%), Gaps = 23/415 (6%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||| ||||||||||||||||| | || | || || ||||| || ||||| | Sbjct 6980 TGGTGCTAAGATCCCCCGAGGCGCTATCCTTTCTGGACCACCGGGTACCGGTAAGACATT 7039 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC-ATCCAGTGCTCTGCCGCAA 175393 || ||| ||| | || || || || ||| || || || ||| || | Sbjct 7040 ACTGGCCAAAGCTACAGCTGGCGAGTCTGGTGTTCCGTTTTATAGCGTGAG-TGGTTCTG 7098 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | || ||||| |||||||||||||| || || | ||||| ||||| |||| || | Sbjct 7099 AATTCGTGGAAATGTTTGTTGGTGTTGGACCCTCCCGAGTTCGTGATCTATTTGCAACAG 7158 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAA----G 175509 ||||| |||| ||| |||||| | ||||| |||||||||||||| | || || Sbjct 7159 CCCGCAAAAACACACCCTGTATTATATTCATCGATGAGATTGATGCTATTGGAAAATCGA 7218 Query 175510 CAACG--CAGCGC---TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATC 175564 | || | ||| ||||||| | ||| |||||| | ||| || | |||| Sbjct 7219 GATCGAAAAACGCTTATGGTGGT------GGAAACGACGAGCGGGAAAGCACGCTGAATC 7272 Query 175565 AACTACTCACCGAGATGGATGGCTTTGACA---ATGAGACTGGCATTGTGGTTATTGCGG 175621 | | ||||| || ||||| ||||| ||| ||| || | | || || | || | Sbjct 7273 AGATTCTCACGGAAATGGACGGCTTCAACACTTCTGA-ACAAG--TCGTTGTCCTGGCTG 7329 Query 175622 CCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||||| || |||||||||||| | ||||| || || || || || ||||| Sbjct 7330 GAACGAATCGGGTTGATATCCTTGATAAGGCCCTGCTGCGACCTGGCCGATTTGA 7384 >seq134 Length=7744 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| | |||||||| || | || || |||||||| | || | |||||||||||||| Sbjct 5294 TTTGGTATGCTATTCTTGAAGCTCAAACTGAGACTGGTAACCCCTTTATGCTTTACAAGG 5353 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 | ||||| ||| ||||||| ||||| ||||| | || ||||| | ||||| || || | Sbjct 5354 ACGCTTGCAACGAGAAGAGCAACCAGAAGAACCTAGGCACAATTAGAAGCTCTAACCTGT 5413 Query 75996 GCACGGAAATTTTAGAGTA 76014 |||| || || | ||||| Sbjct 5414 GCACCGAGATCATTGAGTA 5432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596536460558720