Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq819 98.7 2e-15
>seq819
Length=4427
Score = 98.7 bits (108), Expect = 2e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || || || | ||||| |||| || | ||||||||||||||||| | || |
Sbjct 2217 ATGTTGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGC 2158
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| ||||| ||||| || ||||| || ||||| ||||| ||||||| || || |
Sbjct 2157 TGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTG 2098
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || || || || |||||||| ||||| | ||||| | || ||||||
Sbjct 2097 TCAGAGCTCTCGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGC 2038
Query 192535 AT 192536
||
Sbjct 2037 AT 2036
Score = 93.3 bits (102), Expect = 8e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405
||||| |||||| || || || | ||||| | || || | ||||| || || |||
Sbjct 1998 TCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAG 1939
Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
|| | || || || || ||||| || || ||||||||||| ||||| |||| || ||
Sbjct 1938 ATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTGCTTTTAACGTTG 1879
Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525
|| | |||||| ||| ||||| |||||||| ||||| || || | || || |
Sbjct 1878 TCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACG 1819
Query 192526 AATATCTGCAT 192536
|| ||||||||
Sbjct 1818 AAGATCTGCAT 1808
Score = 91.5 bits (100), Expect = 3e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || | ||| | || | ||||| ||| ||||||||
Sbjct 1809 ATACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCC 1750
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || |||| || | || || ||||| ||||| | | || ||||| ||
Sbjct 1749 GACAAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGG 1690
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||||||||| || ||||| | || || || || | |||||| |||||
Sbjct 1689 GGGATCCCTTCTTTATCCTGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCC 1630
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521
|| || | || ||||| || ||||| | |||||
Sbjct 1629 ACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTT 1595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984423944939400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |