Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq819 104 4e-17 >seq819 Length=4427 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || || | || ||| |||| || | ||||| || || || || | || Sbjct 1989 ATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGT 1930 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || ||||||||||| ||||| |||| || || || ||| Sbjct 1929 TGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTA 1870 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| ||| ||||| |||||||| ||||| || || | || || | ||| |||||| Sbjct 1869 TCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGC 1810 Query 172068 AT 172069 || Sbjct 1809 AT 1808 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 || || ||||| | ||| ||| || ||| || || || || | | ||| | || Sbjct 2247 AACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCT 2188 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 || | |||||||||||||| || | || ||| || || ||||| || ||||| || ||| Sbjct 2187 TCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 2128 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || ||||| ||||||| || || || || || || || || || || |||||| Sbjct 2127 TGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTT 2068 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| | ||||| | ||| |||||||| Sbjct 2067 TTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905085719695200