Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4334 122 3e-22 seq302 95.1 4e-14 seq4046 91.5 4e-13 >seq4334 Length=62496 Score = 122 bits (134), Expect = 3e-22 Identities = 194/274 (71%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| ||||| |||||| || || || ||||| |||||||| ||||| |||||||| Sbjct 46008 CGCTGGATATATCCAGTTTCAGCAGTCTTGACAGCAGTATCAATAAGACCCTCACGACCA 46067 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 |||||||||||||||| | ||| || || || | || | | || ||||||| Sbjct 46068 GCCATAGCATGGAAGAAAAACTCAGTAGGGGTGAGACCACGAAGATAAGAATTCTCAACA 46127 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 || ||||| | ||| ||||| | || ||| || |||||||| | ||| | | | Sbjct 46128 AAGCCACGAGACTCAGGCGAGTAATCATCCTTCGTGAAGTGTGGTAAGGTACGATATTTG 46187 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC-GAAATCATCTG 302834 | ||| |||| ||||| || || |||||| ||||| ||| ||| | | |||| || Sbjct 46188 AAACCGAATGGAATACGTTTCCCTTCAACGGATTGCTG-GCCAACCACAGCAGTCATTTG 46246 Query 302835 CGAAATATT--TAAATCACTGCCCTTGGAGCCAG 302866 |||||||| ||| | | ||||| ||||||| Sbjct 46247 AGAAATATTGATAATTGA--ACCCTTTGAGCCAG 46278 >seq302 Length=30871 Score = 95.1 bits (104), Expect = 4e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 |||||| |||| ||||| || |||||| | |||||| | | ||||| ||| Sbjct 11692 AAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGT 11633 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 || || || || |||| || || ||||| || ||||| || | ||| || || || Sbjct 11632 CTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTC 11573 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || || || ||| || | ||||| || ||||||||||| |||||||| | Sbjct 11572 TGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGT 11513 Query 133631 GACGAGGCACTTCACACCGAATTTGCC 133657 ||||||| | ||||| || |||||| Sbjct 11512 GACGAGGGCTTACACACTGATTTTGCC 11486 >seq4046 Length=39127 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||| ||| ||||| || |||||||||||||| | || || | Sbjct 6072 TGGGCAATGGTCATTCGAGAAGGAATGGCGTGGGGATTGATGATCAGATCTGGAACAATG 6131 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT--TTCCAATAGTTCCCTTTT 251956 || || ||||||||||||||| | || || ||| ||| | |||||||| ||||||| Sbjct 6132 CCCTCGCGAGTGAAGGGCATATCTTCTTG-TCGATA-TGTAATGCCAATAGTACCCTTTT 6189 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | |||||||||||| |||||| || || || Sbjct 6190 GACCGTGACGAGAAGCGAACTTGTCTCCGAT 6220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471733796545628