Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4334 122 3e-22
seq302 95.1 4e-14
seq4046 91.5 4e-13
>seq4334
Length=62496
Score = 122 bits (134), Expect = 3e-22
Identities = 194/274 (71%), Gaps = 6/274 (2%)
Strand=Plus/Plus
Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655
||||| ||||| |||||| || || || ||||| |||||||| ||||| ||||||||
Sbjct 46008 CGCTGGATATATCCAGTTTCAGCAGTCTTGACAGCAGTATCAATAAGACCCTCACGACCA 46067
Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715
|||||||||||||||| | ||| || || || | || | | || |||||||
Sbjct 46068 GCCATAGCATGGAAGAAAAACTCAGTAGGGGTGAGACCACGAAGATAAGAATTCTCAACA 46127
Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775
|| ||||| | ||| ||||| | || ||| || |||||||| | ||| | | |
Sbjct 46128 AAGCCACGAGACTCAGGCGAGTAATCATCCTTCGTGAAGTGTGGTAAGGTACGATATTTG 46187
Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC-GAAATCATCTG 302834
| ||| |||| ||||| || || |||||| ||||| ||| ||| | | |||| ||
Sbjct 46188 AAACCGAATGGAATACGTTTCCCTTCAACGGATTGCTG-GCCAACCACAGCAGTCATTTG 46246
Query 302835 CGAAATATT--TAAATCACTGCCCTTGGAGCCAG 302866
|||||||| ||| | | ||||| |||||||
Sbjct 46247 AGAAATATTGATAATTGA--ACCCTTTGAGCCAG 46278
>seq302
Length=30871
Score = 95.1 bits (104), Expect = 4e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510
|||||| |||| ||||| || |||||| | |||||| | | ||||| |||
Sbjct 11692 AAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGT 11633
Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570
|| || || || |||| || || ||||| || ||||| || | ||| || || ||
Sbjct 11632 CTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTC 11573
Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630
||||| || || || ||| || | ||||| || ||||||||||| |||||||| |
Sbjct 11572 TGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGT 11513
Query 133631 GACGAGGCACTTCACACCGAATTTGCC 133657
||||||| | ||||| || ||||||
Sbjct 11512 GACGAGGGCTTACACACTGATTTTGCC 11486
>seq4046
Length=39127
Score = 91.5 bits (100), Expect = 4e-13
Identities = 113/151 (75%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||||| || ||||| ||| ||||| || |||||||||||||| | || || |
Sbjct 6072 TGGGCAATGGTCATTCGAGAAGGAATGGCGTGGGGATTGATGATCAGATCTGGAACAATG 6131
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT--TTCCAATAGTTCCCTTTT 251956
|| || ||||||||||||||| | || || ||| ||| | |||||||| |||||||
Sbjct 6132 CCCTCGCGAGTGAAGGGCATATCTTCTTG-TCGATA-TGTAATGCCAATAGTACCCTTTT 6189
Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| |||||||||||| |||||| || || ||
Sbjct 6190 GACCGTGACGAGAAGCGAACTTGTCTCCGAT 6220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471733796545628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |