Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3246 118 1e-20 seq902 104 3e-16 seq2201 100 3e-15 >seq3246 Length=18511 Score = 118 bits (130), Expect = 1e-20 Identities = 316/472 (67%), Gaps = 12/472 (3%) Strand=Plus/Minus Query 1852158 GCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 1852217 |||| | ||||| ||||| ||||| || |||||||||||| || ||||| || | | Sbjct 10913 GCGCCAGCGCAAAGATCTTCCGCTGATCAACCCCGCCAAACTGCGCATCGACATCCAAAT 10854 Query 1852218 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGT 1852277 | | ||| || | ||||||||||||||||| | || | | || ||| ||| | Sbjct 10853 GTTCCTCATCCAACGCCTGCATGAGCGGGTAAATCAGGCCGGATAGCGGCGCATTGTCGA 10794 Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACGTGCGCCG 1852334 || ||| || |||| || | ||||||| ||| | ||| | || |||| ||| | Sbjct 10793 CCTGCTTCACAACCTCCGCACCCGCCTTTTTCGCATCATGCTCCGT---CACG-ACGCTG 10738 Query 1852335 C-GAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393 | ||| ||| | ||||| | | ||| | || | |||||| ||| |||| | | Sbjct 10737 CTGAGGCGGAACAGGTCCATTGTGTATTTGGCGGAGAGCTGGTAGTCGCTGCCCAGGATG 10678 Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453 ||||| ||| | | || || ||| |||| | ||| | ||| |||| || | | Sbjct 10677 AACTCCAGTTTGTCGAGGGGAACGTGGATGGCTTCGAGGAGGGCGGAGATGACATAGCGG 10618 Query 1852454 TACCA-GCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGC 1852512 || | ||| | | ||| ||| ||||| || | ||| |||||||||| | | Sbjct 10617 TAGTATTTGGCGCGGAAGTT-GACGAGGTCGATGGGTGCTTTGAGGTTGTCGAGGAAGCC 10559 Query 1852513 GTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTT 1852572 ||| | |||||| | |||||| ||||| | ||||| || |||| |||| ||| ||||| Sbjct 10558 GTGGATGTCGGCTAGGAGGATTTTGACGTGGCAGCCCGCGCGGAGGAAGTGGGCGAGTTT 10499 Query 1852573 GAAGA-TGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCC 1852623 | || |||||| |||||||| ||| ||| ||| || | || ||||| Sbjct 10498 TACGATTGGGCA-GAAGTAGCCGCAGTGTGGGCGGCCGGTTGTTGCGGTGCC 10448 >seq902 Length=26691 Score = 104 bits (114), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 19043 AGAG-GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCG 19101 |||| || || || || || ||||||||||| || | || || || | ||||||| Sbjct 17432 AGAGCGATAGTATAGGTGGAACGGTGACGTGTGTTATAAGAAATGTTCCCGTCGGCCTCG 17491 Query 19102 GCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGG 19161 | ||||| ||||| |||||| |||||||| ||||| ||||| ||||| || || |||| Sbjct 17492 GGGAGCCATGCTTCGACAAGCTCGAGGCCAAACTCGCGCACGCGATGCTTTCTATTCCGG 17551 Query 19162 CCACCAAGGGATTCGAGATTGG 19183 | || ||||| ||||||||||| Sbjct 17552 CAACAAAGGGGTTCGAGATTGG 17573 >seq2201 Length=21329 Score = 100 bits (110), Expect = 3e-15 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||| || |||||| | || ||||| | || |||||| |||| || || Sbjct 7110 GCCGCCAACTACCTTGATATCAAGGCCCTTCTCGACATCGGTTGCAAGACTGTCGCAAAT 7051 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||| || || || |||||||| || || || ||| Sbjct 7050 ATGATCAAGGGCAAGTCCCCAGAAGATATCCGCAAAACTTTCAATATC 7003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106774504548748