Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq819 127 2e-24
seq1691 91.5 1e-13
>seq819
Length=4427
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || || ||||| || || || || || || | |
Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | |||||| || ||||||||||| ||||| || || || |||||
Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAATCCAAGACAAGGAAGGGATCCCACCAGATCAG 2155
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | |||||||| || |||||||| || ||| ||| | || || || |||
Sbjct 2156 CAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAAC 2215
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| ||||| || || || ||||||||| ||||||| || |||
Sbjct 2216 ATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGGC 2263
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| ||||||||||| || ||||| ||| | |
Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || |||| ||||| ||| |||||||| ||||| || || || || || ||
Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAA-ATCCAAGATAAAGAGGGTATCCCACCAGACCA 1926
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||| | ||||| || || |||||||| ||||| ||| | || || || ||
Sbjct 1927 GCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAA 1986
Query 24883 CATTCAAAAGGAATCGACACTACAC 24907
|| ||||| ||||| ||||| |||
Sbjct 1987 TATCCAAAAAGAATCCACACTTCAC 2011
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/194 (72%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777
||||| || || || || || || || | || || ||| | | || || | || |||
Sbjct 1595 AAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCGACAAC 1654
Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837
| || | ||| ||||| || |||||||| || || || ||||| |||||| |||||||
Sbjct 1655 GTGAAGAGCAAA-ATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGATCTT 1713
Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897
|| || || ||||| || ||| | | | |||| ||||||||||| ||||| |||||
Sbjct 1714 CGCTGGAAAGCAGCTCGAAGATGGCCGCACCTTGTCGGATTATAACATCCAAAAAGAATC 1773
Query 24898 GACACTACA-CTTG 24910
|| || || ||||
Sbjct 1774 AACGCTCCATCTTG 1787
>seq1691
Length=23441
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 24796 AGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855
|||||| || || || || ||||| || ||||| |||||||| || || |||||||| ||
Sbjct 9108 AGACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGA 9049
Query 24856 GGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915
||| | | | | || || || ||||| |||||||||||||| || ||| | ||| |
Sbjct 9048 GGACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCT 8989
Query 24916 GCGATTGCGCGGAGG 24930
||| |||| || ||
Sbjct 8988 GCGTCTGCGTGGTGG 8974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449872608188320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |