Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3246 120 5e-21
seq302 100 5e-15
seq2201 96.9 5e-14
>seq3246
Length=18511
Score = 120 bits (132), Expect = 5e-21
Identities = 315/471 (67%), Gaps = 10/471 (2%)
Strand=Plus/Minus
Query 2411501 GCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 2411560
|||| | ||||||||||| ||||| || |||||||||||| || ||||| || | |
Sbjct 10913 GCGCCAGCGCAAAGATCTTCCGCTGATCAACCCCGCCAAACTGCGCATCGACATCCAAAT 10854
Query 2411561 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGT 2411620
| | ||| || | ||||||||||||||||| | ||| | ||||||| ||| |
Sbjct 10853 GTTCCTCATCCAACGCCTGCATGAGCGGGTAAATCAGGCCGGATAGCGGCGCATTGTCGA 10794
Query 2411621 CCATCTTGACCACCTGGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACG-CGCGCCG 2411677
|| ||| || |||| || | ||||||| ||| | ||| | |||||| ||| |
Sbjct 10793 CCTGCTTCACAACCTCCGCACCCGCCTTTTTCGCATCATGC--TCCGTCACGACGCTGC- 10737
Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737
| ||||| || ||||| | ||||| |||| ||||||| |||||||| | | |
Sbjct 10736 TGAGGCGGAACAGGTCCATTGTGTATTTGGCGGAGAGCTGGTAGTCGCTGCCCAGGATGA 10677
Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797
| || || || || || ||| ||| | ||| | ||| |||| || | ||
Sbjct 10676 ACTCCAGTTTGTCGAGGGGAACGTGGATGGCTTCGAGGAGGGCGGAGATGACATAGCGGT 10617
Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857
| | | ||| | ||||||||| || | ||| ||||||||| | |||
Sbjct 10616 AGTATTTGGCGCGGAAGTTGACGAGGTCGATGGGTGCTTTGAGGTTGTCGAGGAAGCCGT 10557
Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917
| | |||||| | |||||| | || | || || || |||| |||| ||| ||||| |
Sbjct 10556 GGATGTCGGCTAGGAGGATTTTGACGTGGCAGCCCGCGCGGAGGAAGTGGGCGAGTTTTA 10497
Query 2411918 AGA-TGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966
|| |||||| |||||||| ||| || || ||| || | ||||||||
Sbjct 10496 CGATTGGGCA-GAAGTAGCCGCAG-TGTGGGCGGCCGGTTGTTGCGGTGCC 10448
>seq302
Length=30871
Score = 100 bits (110), Expect = 5e-15
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643
|| ||||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 11800 GGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCTGAGTGAATGTTCTCCATC 11859
Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666
|||||||||||| || |||||
Sbjct 11860 ATGATCTGGAAGCCGTAGAAGCA 11882
Score = 89.7 bits (98), Expect = 8e-12
Identities = 153/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985
||||| |||||||| || || | || ||||| ||||| | || |||||||
Sbjct 11217 TCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCATGAAGTCAAATGGGTTGGTG 11276
Query 793986 GTCAGGTAG---TGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCA 794042
| |||| | ||| | || || ||| ||| || ||||| || |||||||| |||
Sbjct 11277 GAGTTGTAGACTTTCTTGTTGC-CCAAAGCAACG--AGGAGGCGATCAGCGACGAACTCA 11333
Query 794043 ATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTG 794102
||||| ||||||||||| ||||||||| |||| ||||| || || |||| || |
Sbjct 11334 ATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCGACTGGGAGCGCATCTGAG 11393
Query 794103 ACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATC 794141
| ||||| | |||||| ||| || || ||||||||
Sbjct 11394 AGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432
>seq2201
Length=21329
Score = 96.9 bits (106), Expect = 5e-14
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|||||||||||||| || |||||| |||| ||||| | || |||||||| || || ||
Sbjct 7110 GCCGCCAACTACCTTGATATCAAGGCCCTTCTCGACATCGGTTGCAAGACTGTCGCAAAT 7051
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754
| |||||||||||||| || || || |||||||| || || || |||
Sbjct 7050 ATGATCAAGGGCAAGTCCCCAGAAGATATCCGCAAAACTTTCAATATC 7003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915773671450916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |