Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3246 120 5e-21 seq302 100 5e-15 seq2201 96.9 5e-14 >seq3246 Length=18511 Score = 120 bits (132), Expect = 5e-21 Identities = 315/471 (67%), Gaps = 10/471 (2%) Strand=Plus/Minus Query 2411501 GCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 2411560 |||| | ||||||||||| ||||| || |||||||||||| || ||||| || | | Sbjct 10913 GCGCCAGCGCAAAGATCTTCCGCTGATCAACCCCGCCAAACTGCGCATCGACATCCAAAT 10854 Query 2411561 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGT 2411620 | | ||| || | ||||||||||||||||| | ||| | ||||||| ||| | Sbjct 10853 GTTCCTCATCCAACGCCTGCATGAGCGGGTAAATCAGGCCGGATAGCGGCGCATTGTCGA 10794 Query 2411621 CCATCTTGACCACCTGGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACG-CGCGCCG 2411677 || ||| || |||| || | ||||||| ||| | ||| | |||||| ||| | Sbjct 10793 CCTGCTTCACAACCTCCGCACCCGCCTTTTTCGCATCATGC--TCCGTCACGACGCTGC- 10737 Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737 | ||||| || ||||| | ||||| |||| ||||||| |||||||| | | | Sbjct 10736 TGAGGCGGAACAGGTCCATTGTGTATTTGGCGGAGAGCTGGTAGTCGCTGCCCAGGATGA 10677 Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797 | || || || || || ||| ||| | ||| | ||| |||| || | || Sbjct 10676 ACTCCAGTTTGTCGAGGGGAACGTGGATGGCTTCGAGGAGGGCGGAGATGACATAGCGGT 10617 Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857 | | | ||| | ||||||||| || | ||| ||||||||| | ||| Sbjct 10616 AGTATTTGGCGCGGAAGTTGACGAGGTCGATGGGTGCTTTGAGGTTGTCGAGGAAGCCGT 10557 Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917 | | |||||| | |||||| | || | || || || |||| |||| ||| ||||| | Sbjct 10556 GGATGTCGGCTAGGAGGATTTTGACGTGGCAGCCCGCGCGGAGGAAGTGGGCGAGTTTTA 10497 Query 2411918 AGA-TGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966 || |||||| |||||||| ||| || || ||| || | |||||||| Sbjct 10496 CGATTGGGCA-GAAGTAGCCGCAG-TGTGGGCGGCCGGTTGTTGCGGTGCC 10448 >seq302 Length=30871 Score = 100 bits (110), Expect = 5e-15 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||||| |||||||||||||||||| ||||||||||||||||| ||||| || || Sbjct 11800 GGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCTGAGTGAATGTTCTCCATC 11859 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 |||||||||||| || ||||| Sbjct 11860 ATGATCTGGAAGCCGTAGAAGCA 11882 Score = 89.7 bits (98), Expect = 8e-12 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 ||||| |||||||| || || | || ||||| ||||| | || ||||||| Sbjct 11217 TCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCATGAAGTCAAATGGGTTGGTG 11276 Query 793986 GTCAGGTAG---TGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCA 794042 | |||| | ||| | || || ||| ||| || ||||| || |||||||| ||| Sbjct 11277 GAGTTGTAGACTTTCTTGTTGC-CCAAAGCAACG--AGGAGGCGATCAGCGACGAACTCA 11333 Query 794043 ATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTG 794102 ||||| ||||||||||| ||||||||| |||| ||||| || || |||| || | Sbjct 11334 ATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCGACTGGGAGCGCATCTGAG 11393 Query 794103 ACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATC 794141 | ||||| | |||||| ||| || || |||||||| Sbjct 11394 AGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432 >seq2201 Length=21329 Score = 96.9 bits (106), Expect = 5e-14 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||| || |||||| |||| ||||| | || |||||||| || || || Sbjct 7110 GCCGCCAACTACCTTGATATCAAGGCCCTTCTCGACATCGGTTGCAAGACTGTCGCAAAT 7051 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | |||||||||||||| || || || |||||||| || || || ||| Sbjct 7050 ATGATCAAGGGCAAGTCCCCAGAAGATATCCGCAAAACTTTCAATATC 7003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915773671450916