Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq819 122 6e-23
seq1424 98.7 6e-16
>seq819
Length=4427
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| |||| ||| |||| |||| || | |||||||||||||||||||| ||||||||
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | || |||| || || || || || || ||||| ||||| ||||| ||| | ||
Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||| |||||||| | ||||| ||| ||| | || | ||| | ||||||
Sbjct 2142 ATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACC 2083
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | || ||||| || || || || || || || |||||||||||
Sbjct 2082 TCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| ||| || || || || || ||||| || || | || | ||
Sbjct 2019 AGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCC 1960
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || ||||| |||||||| ||||||||||||||| | || | ||||| || ||
Sbjct 1959 TCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCT 1900
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| ||| ||| | || | || | ||||| |||| || || ||
Sbjct 1899 TGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTT 1840
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||||||||| |||||||||||
Sbjct 1839 TTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 84.2 bits (92), Expect = 1e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|| || || |||||||| ||||| | | |||| |||| || || |||||||| ||||||
Sbjct 1770 TCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAG 1711
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
||||| |||||||| || | || | ||| || || || | ||||| || |||
Sbjct 1710 ATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTGGATTTTGCTCTTCACGTTG 1651
Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966
| || | || | || || || | ||| |||||||| || |||||||| || |||
Sbjct 1650 TCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACA 1591
Query 34967 A 34967
|
Sbjct 1590 A 1590
>seq1424
Length=24560
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/187 (73%), Gaps = 10/187 (5%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|||| || |||||||| || | || || | || |||| || || || || |||||||||
Sbjct 23809 CCTTTTGGATGTTATAATC-GCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAG 23751
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|||| ||| |||||||| | || | |||||||| || | ||||| ||||| ||
Sbjct 23750 ATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGAC--AT 23693
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| ||||| || ||| |||||| |||| || |||||||| ||||||||||||||
Sbjct 23692 --TGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTT 23635
Query 34963 TACAAAG 34969
|| |||
Sbjct 23634 GACGAAG 23628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325675160070836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |