Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq819 122 7e-23
seq1691 91.5 1e-13
>seq819
Length=4427
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|| || |||| ||| | || ||||||||| || ||| || || |||||||| || |||
Sbjct 2265 TGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCC 2206
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
| || || ||| ||| || || ||||| |||||| | || | || |||||||| ||
Sbjct 2205 GAAAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGT 2146
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736
|| || || || |||||||| | ||| ||| || | || | |||||||| ||
Sbjct 2145 GGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCG 2086
Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||||||||| | ||||| || || ||||||||
Sbjct 2085 ACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| ||||| ||||||||||| ||||||||||||| | ||||||
Sbjct 1795 ACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCC 1736
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || || ||||| | |||| | |||||||||||| || || || |||||
Sbjct 1735 ATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTT 1676
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || | ||| || || | || | || || ||| ||| || || | || ||
Sbjct 1675 ATCCTGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGAT 1616
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAA 29776
|| |||||||| | |||||| ||||
Sbjct 1615 GGTCTTGCCAGTGAGGGTTTTCACAA 1590
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| |||||||||||||| || || || || | | || || || || || |||
Sbjct 2010 TGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGT 1951
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || || | || | || |||||| || || || ||||||||||| ||||| | |||
Sbjct 1950 TTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTG 1891
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| || | || | || || || ||| ||||||||||| ||||||||||| ||
Sbjct 1890 CTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTA 1831
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
| ||| || || || ||||||||
Sbjct 1830 AGGGTCTTTACGAAGATCTGCAT 1808
>seq1691
Length=23441
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || ||||||||| | ||||| || ||||| ||||| ||||| || || | |
Sbjct 8974 CCACCACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 9033
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || || || || ||||||||||| | ||||| | |||||| || || |||
Sbjct 9034 AGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGA 9093
Query 29680 ATACCCTCTTTGTCT 29694
|| ||||| ||||||
Sbjct 9094 ATGCCCTCCTTGTCT 9108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385198336046604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |