Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq819 122 7e-23 seq1691 91.5 1e-13 >seq819 Length=4427 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || || |||| ||| | || ||||||||| || ||| || || |||||||| || ||| Sbjct 2265 TGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCC 2206 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | || || ||| ||| || || ||||| |||||| | || | || |||||||| || Sbjct 2205 GAAAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGT 2146 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || || || |||||||| | ||| ||| || | || | |||||||| || Sbjct 2145 GGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCG 2086 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||||||||| | ||||| || || |||||||| Sbjct 2085 ACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| ||||| ||||||||||| ||||||||||||| | |||||| Sbjct 1795 ACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCC 1736 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || ||||| | |||| | |||||||||||| || || || ||||| Sbjct 1735 ATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTT 1676 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | ||| || || | || | || || ||| ||| || || | || || Sbjct 1675 ATCCTGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGAT 1616 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAA 29776 || |||||||| | |||||| |||| Sbjct 1615 GGTCTTGCCAGTGAGGGTTTTCACAA 1590 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| |||||||||||||| || || || || | | || || || || || ||| Sbjct 2010 TGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGT 1951 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || || | || | || |||||| || || || ||||||||||| ||||| | ||| Sbjct 1950 TTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTG 1891 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| || | || | || || || ||| ||||||||||| ||||||||||| || Sbjct 1890 CTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTA 1831 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 1830 AGGGTCTTTACGAAGATCTGCAT 1808 >seq1691 Length=23441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||| | ||||| || ||||| ||||| ||||| || || | | Sbjct 8974 CCACCACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAA 9033 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || || ||||||||||| | ||||| | |||||| || || ||| Sbjct 9034 AGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGA 9093 Query 29680 ATACCCTCTTTGTCT 29694 || ||||| |||||| Sbjct 9094 ATGCCCTCCTTGTCT 9108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385198336046604