Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2446 132 4e-25 seq4334 100 2e-15 >seq2446 Length=49932 Score = 132 bits (146), Expect = 4e-25 Identities = 222/321 (69%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 |||||||||||| || | ||| | | |||||||||||||| || || ||||| || Sbjct 48348 TTTTCTCTTGAATTCGTTTACAAAGTGGTTAACAAGACGATTATCGAAGTCCTCACCACC 48407 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | ||| | || | || | | || | ||| | || ||||||| || | || Sbjct 48408 CAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCCTCTTCAATAGTAAGGAG 48467 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 | ||||| || |||||||||| || ||||| || ||||| ||| || Sbjct 48468 GGAGACATCGAAAGTACCACCACCCAAGTCGAAAATGAGAACATTGCGTTCACCCTCGGC 48527 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || || |||||||| ||||||| ||||||||| || ||||| || || || | | || Sbjct 48528 CTTCTTGTCAAGACCGTACGCAATAGCAGCAGCGGTAGGTTCGTTGATGATACGGAGGAC 48587 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| ||||| ||||| || ||||| || || ||||| | || ||||| || || || Sbjct 48588 ATTGAGACCGGCAATGAGACCAGCATCCTTGGTAGCTTGGCGCTGGGAATCATTGAAGTA 48647 Query 282451 TGCAGGAACAGTAATAACGGC 282471 || || ||||||| ||||| Sbjct 48648 GGCGGGGACAGTAACGACGGC 48668 >seq4334 Length=62496 Score = 100 bits (110), Expect = 2e-15 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191 ||| ||||||||||| | |||||||||||||| ||| ||||| |||| ||| | || || Sbjct 46091 TGAGTTTTTCTTCCATGCTATGGCTGGTCGTGAGGGTCTTATTGATACTGCTGTCAAGAC 46032 Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 |||||| ||||| ||||| || | || ||||| ||| ||||||||| Sbjct 46031 TGCTGAAACTGGATATATCCAGCGGAAGCTTGTGAAGGCGCTTGAAGA 45984 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||||||||| ||| | | ||| ||||||||||| ||||||||| | || || ||| Sbjct 47551 GGTAAAGAAGGCCGTCTACGTCAAAACTTGATGGGAAAACGTGTCGATTTTTCGGCTCGT 47492 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || |||||||| |||||| ||| | || | | |||||||| ||||| ||| ||| Sbjct 47491 ACGGTTATTACAGGTGATCCGAATCTCTCTTTGGACGAAGTTGGAGTTCCGATCAGCATT 47432 Query 432408 GC 432409 || Sbjct 47431 GC 47430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740412218380344