Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq819 89.7 5e-13 >seq819 Length=4427 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||| ||||||||||| || ||||| ||| | || | ||| || || ||| Sbjct 2010 TGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGT 1951 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || || |||| || |||||||| || || || || || ||||| || ||||| Sbjct 1950 TTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTG 1891 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | || |||| | ||| ||||||| ||| | || |||||||| Sbjct 1890 CTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTA 1831 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | || |||||||| || |||||| Sbjct 1830 AGGGTCTTTACGAAGATCTGCATA 1807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||| ||||| || |||| |||||||| || || ||| Sbjct 1776 GTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGAGCTGCTTTCCA 1717 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || ||||||||||||||||||| || || || |||||||| || Sbjct 1716 GCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATC 1673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 ||||| || || || | ||| || ||||| | || || || || |||||||| || Sbjct 2265 TGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCC 2206 Query 137242 CTCATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 137299 | || |||| ||||| || |||||||||||| |||| || || |||||||| | Sbjct 2205 GAAAGCGT--TCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTG 2148 Query 137300 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTT 137359 | || || ||||| ||||| ||||| ||||| | || | ||||| | | | Sbjct 2147 GTGGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCT 2088 Query 137360 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | || || | || | || ||||| |||| ||||| ||||| || |||||| Sbjct 2087 CGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488516861380800