Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq819 129 1e-24 >seq819 Length=4427 Score = 129 bits (142), Expect = 1e-24 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| | || || || || ||||| || ||||| || || || || || Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| ||| |||||||| ||||| ||||||||||| |||| || |||||||| || Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGC-TTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || |||||||| ||||| || ||||| |||||| || ||||| || ||| || | || | Sbjct 2142 ATCCCTTCCTTGTCTTGGAT-TTTGCTTTTTACGTTGTCAATTGTGTCA-GAGCTCTCGA 2085 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || || ||||| |||| || || || || |||||||| Sbjct 2084 CCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981771295986516