Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq134 102 8e-17
seq819 98.7 1e-15
seq302 96.9 3e-15
seq1424 84.2 2e-11
>seq134
Length=7744
Score = 102 bits (112), Expect = 8e-17
Identities = 357/543 (66%), Gaps = 22/543 (4%)
Strand=Plus/Minus
Query 148429 CCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486
|||| |||||||| ||| | || ||||| |||||||| || || || || || || |
Sbjct 5875 CCCAATCCCAGAGGTCGGTG--GGGGTCACTTTCCACATATCATATTGAAGGATACC-CT 5819
Query 148487 GCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC 148545
| || ||||| ||| || |||| | || || |||| ||||| || |||
Sbjct 5818 GAGAGACGGGGGAGCCTTCATACGTGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGG 5759
Query 148546 TCGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCC 148604
||| || | | ||| || |||||| || ||| |||||| |||| | ||| |||
Sbjct 5758 ACGCAGTCAAACTCGC-GTGGTAAATTGTTTCGAAAATTTGAATGTTTAAGAGCTTAGCC 5700
Query 148605 GACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACG 148661
|| | || | || | ||||| | || || || ||||||||||| ||
Sbjct 5699 ---TCAGGTGAATCAAATGGAAGCCGCAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACA 5643
Query 148662 CC-CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720
|| || || |||||| || || | |||| | | || ||||| ||||||||
Sbjct 5642 CCGCAAGC-AATGGGGCGATGACGGAAGTTGCTTCGTCTTGCTTCCTCGACCGGATAGTA 5584
Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAA 148780
||| || ||||||||||||| ||| || || || || || | || | | | |||
Sbjct 5583 GTTCCGATCGATGATCTTGTTAAGGTTACGAACGACAACTTGAGTTACTTCATGGAGCTT 5524
Query 148781 TTCAAAATCGTACTTGTCATCTAC--GATGCATC--GGTT--CACGGCGATAGAGGCTAG 148834
| ||||| |||| | ||| ||| || ||| || || ||||| || |
Sbjct 5523 GCCGAAATCATACTCCCCTCGTACAGGATCCACGAAGGTAGGCAAAGCAATAGACGCCAA 5464
Query 148835 ATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCT 148894
|||||||| || |||||| || | || ||||| | |||||||| |||||| ||
Sbjct 5463 GTTGCACACTGCAACCTCATCTGGCGAGCAATACTCAATGATCTCGGTGCACAGGTTAGA 5404
Query 148895 GCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAG 148954
|| | | || ||| | |||||| || |||||||| |||||| ||||||||||| ||
Sbjct 5403 GCTTCTAATTGTGCCTAGGTTCTTCTGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAG 5344
Query 148955 CAT 148957
|||
Sbjct 5343 CAT 5341
>seq819
Length=4427
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||| ||| ||||| || ||||| || | ||| ||| | || || ||
Sbjct 2241 AAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCA-TCTTCTAG 2183
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || || || | || || |||||||| || || ||||| ||||||||||| |||
Sbjct 2182 CTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGAT 2123
Query 133574 CTTTTGCTTG--AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||||||| | | |||| ||||| | | ||| || || | |||| |||||||
Sbjct 2122 --TTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTTTTG 2065
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||||||||| ||||| ||||||||
Sbjct 2064 CCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 96.9 bits (106), Expect = 3e-15
Identities = 135/185 (73%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
|| || | ||| ||||| ||||| |||||||||||| || || |||| |||||| |
Sbjct 1451 AAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAGGGT--ACGACCGTCCTCAA 1394
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||||||||| ||| | || || ||||| ||||| |||||||| || |||||||| |||
Sbjct 1393 GCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTC-TTGA 1335
Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| | ||| | | || | || || | ||| ||||||| |||| ||| ||
Sbjct 1334 ATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACGTCGAGTGTGATGGTCTTC 1275
Query 133632 CCGGT 133636
|||||
Sbjct 1274 CCGGT 1270
>seq302
Length=30871
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || || || ||||| || || ||||| ||||| || ||| || ||||| |
Sbjct 11195 CTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATC 11254
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || || || |||||| | | ||| || |||| | |||||| ||||| ||
Sbjct 11255 CATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGGAG 11314
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530
|| || || || ||||||||||| | ||||||| || |||||||| || || | |||
Sbjct 11315 GCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGC 11374
Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAAT 120566
|| || | ||| | || ||||||| ||| ||
Sbjct 11375 GACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGAT 11410
>seq1424
Length=24560
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||| ||||| ||| | || | |||||||||||||| ||||| || |||||
Sbjct 23774 TCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTA 23715
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||| || ||||| | || | |||||| ||| ||| || || | |||| |
Sbjct 23714 TCCTGGATTTTACTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATG 23655
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| ||||| || || || || |||||
Sbjct 23654 GTCTTGCCCGTGAGGGTCTTGACGAA 23629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483393945974560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |