Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq134 102 8e-17 seq819 98.7 1e-15 seq302 96.9 3e-15 seq1424 84.2 2e-11 >seq134 Length=7744 Score = 102 bits (112), Expect = 8e-17 Identities = 357/543 (66%), Gaps = 22/543 (4%) Strand=Plus/Minus Query 148429 CCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 |||| |||||||| ||| | || ||||| |||||||| || || || || || || | Sbjct 5875 CCCAATCCCAGAGGTCGGTG--GGGGTCACTTTCCACATATCATATTGAAGGATACC-CT 5819 Query 148487 GCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC 148545 | || ||||| ||| || |||| | || || |||| ||||| || ||| Sbjct 5818 GAGAGACGGGGGAGCCTTCATACGTGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGG 5759 Query 148546 TCGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCC 148604 ||| || | | ||| || |||||| || ||| |||||| |||| | ||| ||| Sbjct 5758 ACGCAGTCAAACTCGC-GTGGTAAATTGTTTCGAAAATTTGAATGTTTAAGAGCTTAGCC 5700 Query 148605 GACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACG 148661 || | || | || | ||||| | || || || ||||||||||| || Sbjct 5699 ---TCAGGTGAATCAAATGGAAGCCGCAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACA 5643 Query 148662 CC-CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTG 148720 || || || |||||| || || | |||| | | || ||||| |||||||| Sbjct 5642 CCGCAAGC-AATGGGGCGATGACGGAAGTTGCTTCGTCTTGCTTCCTCGACCGGATAGTA 5584 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAA 148780 ||| || ||||||||||||| ||| || || || || || | || | | | ||| Sbjct 5583 GTTCCGATCGATGATCTTGTTAAGGTTACGAACGACAACTTGAGTTACTTCATGGAGCTT 5524 Query 148781 TTCAAAATCGTACTTGTCATCTAC--GATGCATC--GGTT--CACGGCGATAGAGGCTAG 148834 | ||||| |||| | ||| ||| || ||| || || ||||| || | Sbjct 5523 GCCGAAATCATACTCCCCTCGTACAGGATCCACGAAGGTAGGCAAAGCAATAGACGCCAA 5464 Query 148835 ATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCT 148894 |||||||| || |||||| || | || ||||| | |||||||| |||||| || Sbjct 5463 GTTGCACACTGCAACCTCATCTGGCGAGCAATACTCAATGATCTCGGTGCACAGGTTAGA 5404 Query 148895 GCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAG 148954 || | | || ||| | |||||| || |||||||| |||||| ||||||||||| || Sbjct 5403 GCTTCTAATTGTGCCTAGGTTCTTCTGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAG 5344 Query 148955 CAT 148957 ||| Sbjct 5343 CAT 5341 >seq819 Length=4427 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||| ||||| || ||||| || | ||| ||| | || || || Sbjct 2241 AAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCA-TCTTCTAG 2183 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | || || |||||||| || || ||||| ||||||||||| ||| Sbjct 2182 CTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGAT 2123 Query 133574 CTTTTGCTTG--AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||||| | | |||| ||||| | | ||| || || | |||| ||||||| Sbjct 2122 --TTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTTTTG 2065 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| ||||| |||||||| Sbjct 2064 CCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/185 (73%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| |||||||||||| || || |||| |||||| | Sbjct 1451 AAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAGGGT--ACGACCGTCCTCAA 1394 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | || || ||||| ||||| |||||||| || |||||||| ||| Sbjct 1393 GCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTC-TTGA 1335 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||| | | || | || || | ||| ||||||| |||| ||| || Sbjct 1334 ATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACGTCGAGTGTGATGGTCTTC 1275 Query 133632 CCGGT 133636 ||||| Sbjct 1274 CCGGT 1270 >seq302 Length=30871 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || || ||||| || || ||||| ||||| || ||| || ||||| | Sbjct 11195 CTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATC 11254 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || || || |||||| | | ||| || |||| | |||||| ||||| || Sbjct 11255 CATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGGAG 11314 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 || || || || ||||||||||| | ||||||| || |||||||| || || | ||| Sbjct 11315 GCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGC 11374 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAAT 120566 || || | ||| | || ||||||| ||| || Sbjct 11375 GACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGAT 11410 >seq1424 Length=24560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| ||||| ||| | || | |||||||||||||| ||||| || ||||| Sbjct 23774 TCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTA 23715 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | || | |||||| ||| ||| || || | |||| | Sbjct 23714 TCCTGGATTTTACTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATG 23655 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| || || || || ||||| Sbjct 23654 GTCTTGCCCGTGAGGGTCTTGACGAA 23629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483393945974560