Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq134 178 3e-39 >seq134 Length=7744 Score = 178 bits (196), Expect = 3e-39 Identities = 474/716 (66%), Gaps = 15/716 (2%) Strand=Plus/Plus Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCG 110344 |||||||| || | | || || || ||||| ||||| || || ||||||| ||||| Sbjct 4472 TCGTGACTTCAATTATCAATACTTCGGATTCAAGACTCTAGAGCGGTCTTATTTGCTTCG 4531 Query 110345 TGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTAT 110404 |||| ||| | | |||||| |||||||||||| | | |||||||| | || || Sbjct 4532 AATCAACGGCAAAGTTGCTGAACGCCCTCAACACATGATCATGCGTGTTGCTGTCGGAAT 4591 Query 110405 TCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGC 110464 ||||||| ||||| | | || || ||| ||| | | | | |||| | | Sbjct 4592 TCATGGAGATGATGTAGAGAAGGTCATCGAAACCTATAACCTCATGTCTCAAAA--ATTC 4649 Query 110465 T--ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCT 110522 | | |||||| |||||||||| || || || || || | || ||||||| Sbjct 4650 TTCACGCATGCTTCTCCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAGATGGCTTCG 4709 Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 ||||| ||| | | || || || || |||||| |||||||| || | || |||| Sbjct 4710 TGCTTCCTTATCGACATGAAGGAGGACAGTATTGAGGGTATTTACGACACG-TTGAAGAC 4768 Query 110583 AC-TGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCT 110640 ||| | ||||| ||| ||| |||| || |||||| | || |||| ||||| Sbjct 4769 TTGTGCCTTGATTTC-AAAGACTGCTGGTGGTATTGGTCTCAACATTCACCGCATTCGTG 4827 Query 110641 CAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | || | | || || | | || || | |||| ||| | ||||||||| | Sbjct 4828 GCACCGGCTCTTACATTGCCGGAACAAATGGATCCTCAAACGGAATCGTTCCAATGCTGC 4887 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCT-----C 110755 | || |||||| ||||||| | |||||| | || || ||||| | || ||| | Sbjct 4888 GCGTTTTCAACAACACTGCTAGATATGTCGACCAGGGAGGTAATA--AACGGCCGGGAGC 4945 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 || ||||| ||||||||||| ||||| | ||||| || |||||||| || || ||||| Sbjct 4946 TTTCGCTATTTATCTCGAACCGTGGCACACTGATATTTTCGAATTCTTGGACCTCCGTAA 5005 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 || || ||| |||||| | || |||||| | || || | |||| | || Sbjct 5006 GAACCACGGAAAGGAAGAAGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGACACCTGA 5065 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | || ||||| |||||| | |||||||| ||| |||| | || || || | Sbjct 5066 TCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAATGAAGC 5125 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991 || || | | ||||| ||||| |||||||| | ||||||||||| |||| Sbjct 5126 GCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACGAAAAGTATG 5181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186745224362684