Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq134 178 3e-39
>seq134
Length=7744
Score = 178 bits (196), Expect = 3e-39
Identities = 474/716 (66%), Gaps = 15/716 (2%)
Strand=Plus/Plus
Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCG 110344
|||||||| || | | || || || ||||| ||||| || || ||||||| |||||
Sbjct 4472 TCGTGACTTCAATTATCAATACTTCGGATTCAAGACTCTAGAGCGGTCTTATTTGCTTCG 4531
Query 110345 TGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTAT 110404
|||| ||| | | |||||| |||||||||||| | | |||||||| | || ||
Sbjct 4532 AATCAACGGCAAAGTTGCTGAACGCCCTCAACACATGATCATGCGTGTTGCTGTCGGAAT 4591
Query 110405 TCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGC 110464
||||||| ||||| | | || || ||| ||| | | | | |||| | |
Sbjct 4592 TCATGGAGATGATGTAGAGAAGGTCATCGAAACCTATAACCTCATGTCTCAAAA--ATTC 4649
Query 110465 T--ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCT 110522
| | |||||| |||||||||| || || || || || | || |||||||
Sbjct 4650 TTCACGCATGCTTCTCCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAGATGGCTTCG 4709
Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582
||||| ||| | | || || || || |||||| |||||||| || | || ||||
Sbjct 4710 TGCTTCCTTATCGACATGAAGGAGGACAGTATTGAGGGTATTTACGACACG-TTGAAGAC 4768
Query 110583 AC-TGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCT 110640
||| | ||||| ||| ||| |||| || |||||| | || |||| |||||
Sbjct 4769 TTGTGCCTTGATTTC-AAAGACTGCTGGTGGTATTGGTCTCAACATTCACCGCATTCGTG 4827
Query 110641 CAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700
| || | | || || | | || || | |||| ||| | ||||||||| |
Sbjct 4828 GCACCGGCTCTTACATTGCCGGAACAAATGGATCCTCAAACGGAATCGTTCCAATGCTGC 4887
Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCT-----C 110755
| || |||||| ||||||| | |||||| | || || ||||| | || ||| |
Sbjct 4888 GCGTTTTCAACAACACTGCTAGATATGTCGACCAGGGAGGTAATA--AACGGCCGGGAGC 4945
Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815
|| ||||| ||||||||||| ||||| | ||||| || |||||||| || || |||||
Sbjct 4946 TTTCGCTATTTATCTCGAACCGTGGCACACTGATATTTTCGAATTCTTGGACCTCCGTAA 5005
Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875
|| || ||| |||||| | || |||||| | || || | |||| | ||
Sbjct 5006 GAACCACGGAAAGGAAGAAGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGACACCTGA 5065
Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935
| | || ||||| |||||| | |||||||| ||| |||| | || || || |
Sbjct 5066 TCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAATGAAGC 5125
Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991
|| || | | ||||| ||||| |||||||| | ||||||||||| ||||
Sbjct 5126 GCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACGAAAAGTATG 5181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186745224362684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |