Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq819 109 4e-19
>seq819
Length=4427
Score = 109 bits (120), Expect = 4e-19
Identities = 167/233 (72%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | ||| | ||||||||||| ||||||||||| || || |||||||| || ||
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || || | ||||| || ||||| || | |||||||||||| | ||
Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143
Query 33643 ACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||||| ||||| | | ||| || ||| || | ||| | ||||| ||| |
Sbjct 2142 ATCCCTTCCTTGTCTTGGATTTTGCTTTTT--ACGTTGTCAATTGTGTCAGAGCT---CT 2088
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | ||||| ||||| || || | ||||| || ||||||||||||
Sbjct 2087 CGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|||||||| || ||||| |||||||| || || |||| || | |||||||| || ||
Sbjct 1998 TCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAG 1939
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|| | || ||||| ||| | || | ||| ||||| || ||||| ||| ||| |
Sbjct 1938 ATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTGCTTTT-AACGTT 1880
Query 33679 GTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734
||| | ||| || ||| ||| || |||| || || ||||| || || | || ||
Sbjct 1879 GTCGATGGTATC---TGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTT 1823
Query 33735 TACAAAGATCTGCATA 33750
||| ||||||||||||
Sbjct 1822 TACGAAGATCTGCATA 1807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328686196980480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |