Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq819 109 4e-19 >seq819 Length=4427 Score = 109 bits (120), Expect = 4e-19 Identities = 167/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| | ||||||||||| ||||||||||| || || |||||||| || || Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| || ||||| || | |||||||||||| | || Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143 Query 33643 ACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| | | ||| || ||| || | ||| | ||||| ||| | Sbjct 2142 ATCCCTTCCTTGTCTTGGATTTTGCTTTTT--ACGTTGTCAATTGTGTCAGAGCT---CT 2088 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| ||||| || || | ||||| || |||||||||||| Sbjct 2087 CGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||| |||||||| || || |||| || | |||||||| || || Sbjct 1998 TCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAG 1939 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | || ||||| ||| | || | ||| ||||| || ||||| ||| ||| | Sbjct 1938 ATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTGCTTTT-AACGTT 1880 Query 33679 GTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 ||| | ||| || ||| ||| || |||| || || ||||| || || | || || Sbjct 1879 GTCGATGGTATC---TGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTT 1823 Query 33735 TACAAAGATCTGCATA 33750 ||| |||||||||||| Sbjct 1822 TACGAAGATCTGCATA 1807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328686196980480