Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq819 114 1e-20
seq1691 102 8e-17
seq302 100 3e-16
seq1424 87.8 2e-12
>seq819
Length=4427
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA 134557
|| |||||| | || || ||| ||||| |||||||||||||| || || ||
Sbjct 2251 TCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACC 2192
Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617
|| || |||||||| || ||||| || | ||||||||||| || || || ||||| ||
Sbjct 2191 ATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTT 2132
Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677
||||| ||||| ||| || ||| | |||||| || || || || || || ||
Sbjct 2131 GTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGAT 2072
Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||| || || | |||||| ||||| || |||||
Sbjct 2071 GGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | ||| || | || | ||| || || || ||||| || || ||||| |||
Sbjct 1474 TTCCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGG 1415
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| ||| || ||| || ||||| ||||| || || || | ||||| || || || |
Sbjct 1414 ACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAG 1355
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || ||||||||||| || |||||||| | || || || || |
Sbjct 1354 GGATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAA 1295
Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689
||||||| || ||||| || |||||
Sbjct 1294 CGTCGAGTGTGATGGTCTTCCCGGT 1270
>seq1691
Length=23441
Score = 102 bits (112), Expect = 8e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||||||||| || || ||||||||||| ||||||||||| || ||| |
Sbjct 8983 AGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGG 9042
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||||||||| || || ||||| || ||||| ||||| || ||||| ||
Sbjct 9043 CCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCC 9102
Query 134616 TTTTCT 134621
|| |||
Sbjct 9103 TTGTCT 9108
>seq302
Length=30871
Score = 100 bits (110), Expect = 3e-16
Identities = 304/464 (66%), Gaps = 17/464 (4%)
Strand=Plus/Plus
Query 21422 TCTTGTATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTT 21481
||| ||| || || || ||| |||| ||||| || ||||| ||| | || | ||||| |
Sbjct 11194 TCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTAT 11253
Query 21482 TCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTT---CAATTCCACGC 21538
||| || | ||| || ||| ||| || | ||||||| ||| ||| | |||
Sbjct 11254 CCATGAAGTCAAATGGGTTGGTGGAGTTGTAGA--CTTTCTT-GTTGCCCAAAGCAACGA 11310
Query 21539 ACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACA 21598
| ||||| || ||||| ||||||||||| |||||| | | ||||| || | |
Sbjct 11311 GGAGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAA 11370
Query 21599 GATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCA 21658
| |||| || ||||| || | || ||||||| |||||||| || ||||| |||| |
Sbjct 11371 GCGCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGA 11430
Query 21659 TGGCGTGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTG-TTGTAGTAG 21717
| | | | || | | | || | || | | || | | || || |
Sbjct 11431 T--CCTCT-------CGACAGCCTCTTGGCTAGGACGGT-GACGCAAGTGAGAAAAGAGG 11480
Query 21718 AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTG 21777
||||| ||||||| ||||| || |||||||| || ||||| | ||||| |||||
Sbjct 11481 AGACAGGCAAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTA 11540
Query 21778 AGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaa 21837
||||| ||||| | ||| || || || | | || |||| || ||| ||| ||
Sbjct 11541 AGACCAGGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAG 11600
Query 21838 aaCACGCCCTCCACAATGGCGAACGCCACCATGCGCCGCGCCAA 21881
|| | ||| || ||| ||||| || || | ||| |||| ||
Sbjct 11601 AAGATGCCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAA 11644
>seq1424
Length=24560
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
||||||| ||||| || |||| || || | || || ||||||||||| || || |
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| ||||| || || || || || || || ||||| ||||| ||
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||| || || || || ||||| ||||| || || || | || || ||||
Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630
Query 134704 A 134704
|
Sbjct 23629 A 23629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505370325118880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |