Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq819 114 1e-20 seq1691 102 8e-17 seq302 100 3e-16 seq1424 87.8 2e-12 >seq819 Length=4427 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA 134557 || |||||| | || || ||| ||||| |||||||||||||| || || || Sbjct 2251 TCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACC 2192 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || |||||||| || ||||| || | ||||||||||| || || || ||||| || Sbjct 2191 ATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTT 2132 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| ||||| ||| || ||| | |||||| || || || || || || || Sbjct 2131 GTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGAT 2072 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || | |||||| ||||| || ||||| Sbjct 2071 GGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | || | ||| || || || ||||| || || ||||| ||| Sbjct 1474 TTCCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGG 1415 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || ||| || ||||| ||||| || || || | ||||| || || || | Sbjct 1414 ACAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAG 1355 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||||||||| || |||||||| | || || || || | Sbjct 1354 GGATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAA 1295 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 ||||||| || ||||| || ||||| Sbjct 1294 CGTCGAGTGTGATGGTCTTCCCGGT 1270 >seq1691 Length=23441 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| || || ||||||||||| ||||||||||| || ||| | Sbjct 8983 AGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGG 9042 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||||||||| || || ||||| || ||||| ||||| || ||||| || Sbjct 9043 CCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCC 9102 Query 134616 TTTTCT 134621 || ||| Sbjct 9103 TTGTCT 9108 >seq302 Length=30871 Score = 100 bits (110), Expect = 3e-16 Identities = 304/464 (66%), Gaps = 17/464 (4%) Strand=Plus/Plus Query 21422 TCTTGTATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTT 21481 ||| ||| || || || ||| |||| ||||| || ||||| ||| | || | ||||| | Sbjct 11194 TCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTAT 11253 Query 21482 TCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTT---CAATTCCACGC 21538 ||| || | ||| || ||| ||| || | ||||||| ||| ||| | ||| Sbjct 11254 CCATGAAGTCAAATGGGTTGGTGGAGTTGTAGA--CTTTCTT-GTTGCCCAAAGCAACGA 11310 Query 21539 ACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACA 21598 | ||||| || ||||| ||||||||||| |||||| | | ||||| || | | Sbjct 11311 GGAGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAA 11370 Query 21599 GATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCA 21658 | |||| || ||||| || | || ||||||| |||||||| || ||||| |||| | Sbjct 11371 GCGCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGA 11430 Query 21659 TGGCGTGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTG-TTGTAGTAG 21717 | | | | || | | | || | || | | || | | || || | Sbjct 11431 T--CCTCT-------CGACAGCCTCTTGGCTAGGACGGT-GACGCAAGTGAGAAAAGAGG 11480 Query 21718 AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTG 21777 ||||| ||||||| ||||| || |||||||| || ||||| | ||||| ||||| Sbjct 11481 AGACAGGCAAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTA 11540 Query 21778 AGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaa 21837 ||||| ||||| | ||| || || || | | || |||| || ||| ||| || Sbjct 11541 AGACCAGGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAG 11600 Query 21838 aaCACGCCCTCCACAATGGCGAACGCCACCATGCGCCGCGCCAA 21881 || | ||| || ||| ||||| || || | ||| |||| || Sbjct 11601 AAGATGCCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAA 11644 >seq1424 Length=24560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| ||||| || |||| || || | || || ||||||||||| || || | Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| ||||| || || || || || || || ||||| ||||| || Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||| || || || || ||||| ||||| || || || | || || |||| Sbjct 23689 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 23630 Query 134704 A 134704 | Sbjct 23629 A 23629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505370325118880