Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq134 212 9e-50
seq302 109 8e-19
>seq134
Length=7744
Score = 212 bits (234), Expect = 9e-50
Identities = 578/881 (66%), Gaps = 12/881 (1%)
Strand=Plus/Minus
Query 69535 ACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA 69594
||||| |||| || || |||||| || || | | | ||| | ||| | || |
Sbjct 5143 ACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCA 5084
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
|| || |||||||| ||||| || |||||||||||| || ||||| | | | | |
Sbjct 5083 ACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACT 5024
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| ||||| || || || || | || || | |||||||| ||||| |||
Sbjct 5023 TCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGT 4964
Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774
|| ||||| || || | ||||||| |||||||| |||||||| || | ||||| |||
Sbjct 4963 TCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCA 4904
Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834
||||| || | || | |||||| |||| || || || || ||||||||||| | |
Sbjct 4903 GTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCA 4844
Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894
|| ||| || | | ||||| ||| ||||| || || || || | ||
Sbjct 4843 ATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTT 4784
Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954
|| || | |||||| ||||| ||||| || |||||||| || || || || |||||
Sbjct 4783 GAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATG 4724
Query 69955 TTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGA 70014
| | ||| || || || ||| ||| | || || || ||||| || | ||||||
Sbjct 4723 TCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGA 4664
Query 70015 GATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATA 70074
|| || || ||||| |||||| ||| | || || || ||||| || | |||| |
Sbjct 4663 GAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACA 4604
Query 70075 TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134
|| ||||||||| | || |||||||| | ||| || ||||| ||||| | |
Sbjct 4603 TCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACT 4544
Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194
|| || ||| | || || || || ||||| || || || || || | ||
Sbjct 4543 TTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAA 4484
Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATA 70254
||||| | || || | ||| ||||||| | || |||| || | ||| |
Sbjct 4483 TTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCCGCATGCCGCATCACTGT- 4425
Query 70255 TCCATAACAGTAG---GTGAGATAATCGG---AGATCGTTTACCATTTTTAGGATTAACA 70308
| | || |||| | || || || || || ||||| ||| || || || | |
Sbjct 4424 TTCGTA--CGTAGCCTGCGATATCATTGGGGCAGGTCGTT---GATTCTTCGGGTTGATA 4370
Query 70309 TAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTT 70368
|| | | | | || || || || | |||| ||||||| |||| |||||| | |||
Sbjct 4369 TAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGCTTGTGGAGATTG 4310
Query 70369 GATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409
|||| ||||| | ||| ||||| || || ||||| || ||
Sbjct 4309 GATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269
Score = 136 bits (150), Expect = 5e-27
Identities = 703/1107 (64%), Gaps = 31/1107 (3%)
Strand=Plus/Minus
Query 68368 TCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTT 68427
|||| ||||||||||| || | ||||| | ||||||| ||||||||||| ||||||
Sbjct 6389 TCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGTT 6330
Query 68428 TTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCG 68487
|||||||| || |||| || ||||||||| || || | |||| | ||| |||
Sbjct 6329 TTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTG----CCCATGG-TCG 6275
Query 68488 GCT-----ATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542
||| | ||| ||||| | || || ||| ||||| || || |||| ||| || |
Sbjct 6274 GCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAG 6215
Query 68543 CCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602
|||| | | ||| | |||| |||||||| | |||||| | | ||||||||
Sbjct 6214 CCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATAT 6155
Query 68603 CATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGA 68659
| | ||| | | | | | || ||||| || || || || | ||||| || || |
Sbjct 6154 CCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCA 6095
Query 68660 TCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTT 68719
| | || ||||| | ||| | | | ||||| |||||| || ||||
Sbjct 6094 TGTTGTCGGACCACAGACCCATGTCCACGAGGTCCTTCAGGAGCCACGGATTGACGATTT 6035
Query 68720 GAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 68779
| ||||| || | | || | ||| | ||| || ||| ||| ||||| || | |||
Sbjct 6034 GGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCATT 5975
Query 68780 CATTATTTCCCAGAATTTGAGCAGTTGAT-GCAGTTGGCATAGGTGCCACCAATAAACTA 68838
| || || ||||| || || | || | ||||| ||||| || || || | ||||||
Sbjct 5974 CGTTGAACCCAAGAATCTG-GCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACTA 5916
Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898
|| | | ||||| | || | | ||| || | ||||||||| || || |
Sbjct 5915 TTACGCACTCCATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCGGTG 5856
Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958
|| || ||||| | ||| ||||| || || || | | | || || | |||
Sbjct 5855 GGGGTCACTTTCCACATATCATATTGAAGGATACCCTGAGAGACGGGGGAGCCTTCATAC 5796
Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC-CTCTAATGCACCGTAATA 69017
|| ||| || || || || ||| || ||||| || || || | ||| ||
Sbjct 5795 GTGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGGACGCAGTCAAACTC-GCGTGGTA 5737
Query 69018 AATTGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAAT 69076
||||||||||||||| | | || ||| ||| || || | ||| ||||||
Sbjct 5736 AATTGTTTCGAAAATTTGAATGTTTAAGAGCTT-AGCCTCAGGTGAATCAAATGGAAGCC 5678
Query 69077 GTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136
| | | || || ||||| || | ||||| || || | | || || | ||| |
Sbjct 5677 GCAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGAC-GG 5619
Query 69137 TATTTGAACTT--TC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAA 69193
| ||| ||| || ||||| | ||||| || || ||| || || || ||||
Sbjct 5618 AAGTTG--CTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAA 5561
Query 69194 GATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA------TCGTC 69247
| || || || || |||| | || || | || ||| |||||| | ||||
Sbjct 5560 GGTTACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATACTCCCCTCGTA 5501
Query 69248 CATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307
|| || || || || || | ||| || | || || ||||| ||||||| |
Sbjct 5500 CAGGATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTG 5441
Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367
||| | || ||||| || || || ||| | | | || || || || || |
Sbjct 5440 GCGAGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCT 5381
Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427
||| || ||||| | ||| || |||||||||||||| ||||| || ||||||| |||
Sbjct 5380 TCTGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAG 5321
Query 69428 TCTGAGATTCGATAATAGATTTCCAAA 69454
| |||| ||| | ||||| | |||||
Sbjct 5320 TTTGAGCTTCAAGAATAGCATACCAAA 5294
>seq302
Length=30871
Score = 109 bits (120), Expect = 8e-19
Identities = 288/440 (65%), Gaps = 0/440 (0%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| ||||| |||||||| ||||| ||||| || || ||||| ||| ||| || || ||
Sbjct 11193 TTCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTA 11252
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| ||||| || || || | || || ||| || || || | |
Sbjct 11253 TCCATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGG 11312
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | ||| || || || || |||||| ||| | | |||||||| | ||
Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGC 11372
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
||||| || || || | || ||||| | ||||| || || || || || |||
Sbjct 11373 GCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625
|| |||| | || || | || || || ||| | | ||||| ||
Sbjct 11433 CTCTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGACAGGCAAAA 11492
Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685
||| |||| |||||| || | | ||| | ||||||||||| || || ||||||||
Sbjct 11493 TCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCATA 11552
Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745
||||| || || || ||||| || || | ||| || ||||| ||||||||||||||
Sbjct 11553 AGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTCA 11612
Query 39746 ACTGCTGCAAATGCAACAAG 39765
|| || || || || |||||
Sbjct 11613 ACAGCAGCGAAGGCGACAAG 11632
Score = 93.3 bits (102), Expect = 6e-14
Identities = 175/257 (68%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
||||| || ||||| || ||| ||||| || ||||| || || | || || | ||
Sbjct 11839 TCTGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGAACC 11898
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| ||||| | || | || ||| ||||| || || || ||||| |||||
Sbjct 11899 TGAACCTCCCCGCTGAAACGCTCAACCAGGTTTTCGTTGACAATGCCATCCGACGCGGCG 11958
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090
|| |||||||| || ||| || || || ||||| ||||| || |||||
Sbjct 11959 AAGAATGCCAACACGTGTGAGATGAAGTACCGCTCATCATCGTTCAATCTGTTGTTCCAA 12018
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|| | | ||||||||| | || | |||||| || ||||| |||||||||||||| ||
Sbjct 12019 TCGTGAAGATCTTTTGAGAGGTCAATTTCTTCTGCAGTCCAGAACGACGCCTCTGCTTTC 12078
Query 40151 TTGTACATGTTCCATAT 40167
|| ||||| | ||| ||
Sbjct 12079 TTATACATTTGCCAGAT 12095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686870642216160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |