Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq134 212 9e-50 seq302 109 8e-19 >seq134 Length=7744 Score = 212 bits (234), Expect = 9e-50 Identities = 578/881 (66%), Gaps = 12/881 (1%) Strand=Plus/Minus Query 69535 ACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA 69594 ||||| |||| || || |||||| || || | | | ||| | ||| | || | Sbjct 5143 ACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCA 5084 Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 || || |||||||| ||||| || |||||||||||| || ||||| | | | | | Sbjct 5083 ACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACT 5024 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| ||||| || || || || | || || | |||||||| ||||| ||| Sbjct 5023 TCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGT 4964 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 || ||||| || || | ||||||| |||||||| |||||||| || | ||||| ||| Sbjct 4963 TCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCCTGGTCGACATATCTAGCA 4904 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| || | || | |||||| |||| || || || || ||||||||||| | | Sbjct 4903 GTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCA 4844 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894 || ||| || | | ||||| ||| ||||| || || || || | || Sbjct 4843 ATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTT 4784 Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 || || | |||||| ||||| ||||| || |||||||| || || || || ||||| Sbjct 4783 GAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCAATACTGTCCTCCTTCATG 4724 Query 69955 TTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGA 70014 | | ||| || || || ||| ||| | || || || ||||| || | |||||| Sbjct 4723 TCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGA 4664 Query 70015 GATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATA 70074 || || || ||||| |||||| ||| | || || || ||||| || | |||| | Sbjct 4663 GAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTTTCGATGACCTTCTCTACA 4604 Query 70075 TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134 || ||||||||| | || |||||||| | ||| || ||||| ||||| | | Sbjct 4603 TCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGTTGAGGGCGTTCAGCAACT 4544 Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 || || ||| | || || || || ||||| || || || || || | || Sbjct 4543 TTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTTGAATCCGAAGTATTGATAA 4484 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATA 70254 ||||| | || || | ||| ||||||| | || |||| || | ||| | Sbjct 4483 TTGAAGTCACGATCATAGACAATGGCAGAATTAAATTCATCCGCATGCCGCATCACTGT- 4425 Query 70255 TCCATAACAGTAG---GTGAGATAATCGG---AGATCGTTTACCATTTTTAGGATTAACA 70308 | | || |||| | || || || || || ||||| ||| || || || | | Sbjct 4424 TTCGTA--CGTAGCCTGCGATATCATTGGGGCAGGTCGTT---GATTCTTCGGGTTGATA 4370 Query 70309 TAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTT 70368 || | | | | || || || || | |||| ||||||| |||| |||||| | ||| Sbjct 4369 TAATGGTAGAGGTCATCTATCACCGAAGAAAATTGTTTTTTAGTTTGCTTGTGGAGATTG 4310 Query 70369 GATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 |||| ||||| | ||| ||||| || || ||||| || || Sbjct 4309 GATACAGCTATCCGGGCAGCTAGGATTGCGTAGTCTGGGTG 4269 Score = 136 bits (150), Expect = 5e-27 Identities = 703/1107 (64%), Gaps = 31/1107 (3%) Strand=Plus/Minus Query 68368 TCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTT 68427 |||| ||||||||||| || | ||||| | ||||||| ||||||||||| |||||| Sbjct 6389 TCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGTT 6330 Query 68428 TTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCG 68487 |||||||| || |||| || ||||||||| || || | |||| | ||| ||| Sbjct 6329 TTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTG----CCCATGG-TCG 6275 Query 68488 GCT-----ATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542 ||| | ||| ||||| | || || ||| ||||| || || |||| ||| || | Sbjct 6274 GCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAG 6215 Query 68543 CCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602 |||| | | ||| | |||| |||||||| | |||||| | | |||||||| Sbjct 6214 CCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATAT 6155 Query 68603 CATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGA 68659 | | ||| | | | | | || ||||| || || || || | ||||| || || | Sbjct 6154 CCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCA 6095 Query 68660 TCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTT 68719 | | || ||||| | ||| | | | ||||| |||||| || |||| Sbjct 6094 TGTTGTCGGACCACAGACCCATGTCCACGAGGTCCTTCAGGAGCCACGGATTGACGATTT 6035 Query 68720 GAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 68779 | ||||| || | | || | ||| | ||| || ||| ||| ||||| || | ||| Sbjct 6034 GGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCATT 5975 Query 68780 CATTATTTCCCAGAATTTGAGCAGTTGAT-GCAGTTGGCATAGGTGCCACCAATAAACTA 68838 | || || ||||| || || | || | ||||| ||||| || || || | |||||| Sbjct 5974 CGTTGAACCCAAGAATCTG-GCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACTA 5916 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | | ||||| | || | | ||| || | ||||||||| || || | Sbjct 5915 TTACGCACTCCATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCGGTG 5856 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || || ||||| | ||| ||||| || || || | | | || || | ||| Sbjct 5855 GGGGTCACTTTCCACATATCATATTGAAGGATACCCTGAGAGACGGGGGAGCCTTCATAC 5796 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC-CTCTAATGCACCGTAATA 69017 || ||| || || || || ||| || ||||| || || || | ||| || Sbjct 5795 GTGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGGACGCAGTCAAACTC-GCGTGGTA 5737 Query 69018 AATTGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAAT 69076 ||||||||||||||| | | || ||| ||| || || | ||| |||||| Sbjct 5736 AATTGTTTCGAAAATTTGAATGTTTAAGAGCTT-AGCCTCAGGTGAATCAAATGGAAGCC 5678 Query 69077 GTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 | | | || || ||||| || | ||||| || || | | || || | ||| | Sbjct 5677 GCAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGAC-GG 5619 Query 69137 TATTTGAACTT--TC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAA 69193 | ||| ||| || ||||| | ||||| || || ||| || || || |||| Sbjct 5618 AAGTTG--CTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAA 5561 Query 69194 GATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA------TCGTC 69247 | || || || || |||| | || || | || ||| |||||| | |||| Sbjct 5560 GGTTACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATACTCCCCTCGTA 5501 Query 69248 CATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 || || || || || || | ||| || | || || ||||| ||||||| | Sbjct 5500 CAGGATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTG 5441 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 ||| | || ||||| || || || ||| | | | || || || || || | Sbjct 5440 GCGAGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCT 5381 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 ||| || ||||| | ||| || |||||||||||||| ||||| || ||||||| ||| Sbjct 5380 TCTGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAG 5321 Query 69428 TCTGAGATTCGATAATAGATTTCCAAA 69454 | |||| ||| | ||||| | ||||| Sbjct 5320 TTTGAGCTTCAAGAATAGCATACCAAA 5294 >seq302 Length=30871 Score = 109 bits (120), Expect = 8e-19 Identities = 288/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| |||||||| ||||| ||||| || || ||||| ||| ||| || || || Sbjct 11193 TTCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTA 11252 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| ||||| || || || | || || ||| || || || | | Sbjct 11253 TCCATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGG 11312 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | ||| || || || || |||||| ||| | | |||||||| | || Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGC 11372 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 ||||| || || || | || ||||| | ||||| || || || || || ||| Sbjct 11373 GCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 || |||| | || || | || || || ||| | | ||||| || Sbjct 11433 CTCTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGACAGGCAAAA 11492 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 ||| |||| |||||| || | | ||| | ||||||||||| || || |||||||| Sbjct 11493 TCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCATA 11552 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||| || || || ||||| || || | ||| || ||||| |||||||||||||| Sbjct 11553 AGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTCA 11612 Query 39746 ACTGCTGCAAATGCAACAAG 39765 || || || || || ||||| Sbjct 11613 ACAGCAGCGAAGGCGACAAG 11632 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 ||||| || ||||| || ||| ||||| || ||||| || || | || || | || Sbjct 11839 TCTGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGAACC 11898 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| | || | || ||| ||||| || || || ||||| ||||| Sbjct 11899 TGAACCTCCCCGCTGAAACGCTCAACCAGGTTTTCGTTGACAATGCCATCCGACGCGGCG 11958 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || |||||||| || ||| || || || ||||| ||||| || ||||| Sbjct 11959 AAGAATGCCAACACGTGTGAGATGAAGTACCGCTCATCATCGTTCAATCTGTTGTTCCAA 12018 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | | ||||||||| | || | |||||| || ||||| |||||||||||||| || Sbjct 12019 TCGTGAAGATCTTTTGAGAGGTCAATTTCTTCTGCAGTCCAGAACGACGCCTCTGCTTTC 12078 Query 40151 TTGTACATGTTCCATAT 40167 || ||||| | ||| || Sbjct 12079 TTATACATTTGCCAGAT 12095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686870642216160