Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq819 114 1e-20 >seq819 Length=4427 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| |||||||||||| | | || |||| || |||||||| || Sbjct 2004 GTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGTTTTCCT 1945 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || || || || || || || | |||||||||||| ||| ||| |||| Sbjct 1944 GCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCTTGGATTTTGCTTTTA 1885 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || |||| | ||| ||||| ||||| |||| |||||| || || || Sbjct 1884 ACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTC 1825 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 1824 TTTACGAAGATCTGCATA 1807 Score = 104 bits (114), Expect = 2e-17 Identities = 167/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 27011 ATAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATAT 27069 ||| ||| || || || ||||| | ||| |||||||| | || || || ||||| | Sbjct 2273 ATATTTAGTGGCCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGT 2214 Query 27070 TGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTT 27129 ||||||| | | || | ||||| ||||||||||| || | || || ||||| | Sbjct 2213 TGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCT 2154 Query 27130 GATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG 27189 |||| || || | || || || || ||| ||| |||| | | | || | ||||| | Sbjct 2153 GATCTGGTGGGATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAG 2094 Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || | |||||| |||||||||||||| ||||| |||||| Sbjct 2093 AGCTCTCGACCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCATA 2035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || |||||||| || || || || || | |||| | ||||||||||| Sbjct 1783 ATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCTTCGAGCTG 1724 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || ||| | || ||||| || |||||||| || | || |||||||| ||| || Sbjct 1723 CTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTGGATTTT 1664 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | | |||| | | || | || |||| | ||| || || | || || | ||||| || Sbjct 1663 GCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTTGCCAGT 1604 Query 27224 CAGAGTTTTCACAA 27237 || |||||||||| Sbjct 1603 GAGGGTTTTCACAA 1590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424911385021728