Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3947 102 1e-16 >seq3947 Length=14563 Score = 102 bits (112), Expect = 1e-16 Identities = 274/415 (66%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || || || ||||| | |||||||||||| || ||||| || | || Sbjct 7384 TCAAATCGGCCAGGTCGCAGCAGGGCCTTATCAAGGATATCAACCCGATTCGTTCCAGCC 7325 Query 11513 ATAACCACAATGCCAGTCTCAT---TGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 | || || | | || ||| ||| ||||| ||||| || ||||| | ||||| Sbjct 7324 AGGACAACGA--CTTGT-TCAGAAGTGTTGAAGCCGTCCATTTCCGTGAGAATCTGATTC 7268 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC--------- 11620 | || ||| | ||| || ||| | ||||||| | | || | Sbjct 7267 AGCGTGCTTTCCCGCTCGTCGTTTCC------ACCACCATAAGCGTTTTTCGATCTCGAT 7214 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || | |||||||||||||| ||||| | |||||| ||| |||| |||||| || Sbjct 7213 TTTCCAATAGCATCAATCTCATCGATGAATATAATACAGGGTGTGTTTTTGCGGGCTGTT 7154 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 |||| ||||| ||||| | || || |||||||||||||| ||||| || | | Sbjct 7153 GCAAATAGATCACGAACTCGGGAGGGTCCAACACCAACAAACATTTCCACGAATTCAGAA 7094 Query 11741 GCAGAGCACTGGAT-GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 || ||| || || || ||| || || || || | ||| ||| || | || Sbjct 7093 CCA-CTCACGCTATAAAACGGAACACCAGACTCGCCAGCTGTAGCTTTGGCCAGTAATGT 7035 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 ||| || ||||| || || | || | ||||||||||||||||| |||||| Sbjct 7034 CTTACCGGTACCCGGTGGTCCAGAAAGGATAGCGCCTCGGGGGATCTTAGCACCA 6980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627997112822400