Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq134 136 5e-27 seq302 127 3e-24 >seq134 Length=7744 Score = 136 bits (150), Expect = 5e-27 Identities = 408/628 (65%), Gaps = 4/628 (1%) Strand=Plus/Minus Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 |||||| ||| || || |||||||| |||| | | || | | ||||| || | | Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCA 5120 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| ||||||| ||||| ||| | |||||| |||||||| ||||| || || Sbjct 5119 TTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGT 5060 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 |||| || || ||| ||||| ||| ||| ||||||| | || || || ||| Sbjct 5059 GTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGG 5000 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | ||||| || || | ||||| | |||||||||||| || || | |||| | ||| Sbjct 4999 AGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCC 4940 Query 119178 TTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 || | ||| |||||| ||||| || |||||| ||| || || || |||||| Sbjct 4939 GGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATT 4880 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294 |||| ||| || | || |||||||| || ||| ||| || | | | Sbjct 4879 GGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATG 4820 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354 ||| |||| | ||||||||| || || |||||| || || || | | | Sbjct 4819 CGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAAC 4760 Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 || |||| || || || || ||| |||| | |||| |||||||| | ||| Sbjct 4759 GTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATC 4700 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG 119474 ||||| || ||||| || ||||| || || || | || || |||| | ||| Sbjct 4699 TGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGA 4640 Query 119475 GACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 119534 ||||| || ||||| || | ||| | || || || ||||| |||| | Sbjct 4639 GACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCA 4580 Query 119535 ACCCGCATAAACATGTATTG-GGGTGTT 119561 || ||||| | ||||| ||| ||| ||| Sbjct 4579 ACACGCATGATCATGTGTTGAGGGCGTT 4552 >seq302 Length=30871 Score = 127 bits (140), Expect = 3e-24 Identities = 305/453 (67%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| || || ||||||||||| || || || ||| | ||| || ||||| Sbjct 11199 TAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCATG 11258 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-TTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||||||||| | ||||| | | || || | |||| |||||| || Sbjct 11259 AAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAAC-GAGGAGGCG 11317 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 ||| | |||| |||||||||| | |||| || || |||||| |||| || | || Sbjct 11318 ATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCGAC 11377 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||| || ||| |||| ||| ||| || |||||||| | ||| | Sbjct 11378 -TGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATCCTCT 11436 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACT 130022 | | ||| || ||| | | ||||| || || ||| || |||||| | Sbjct 11437 CGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGA--CA-GGCAAAAT 11493 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||||||||||| || || || || || || || ||||| ||||| | Sbjct 11494 CAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCATAA 11553 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| || ||||||| |||||| || | | || || || ||||||||| || || | Sbjct 11554 GACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTCAA 11613 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || ||||| || | ||||||| ||||||| Sbjct 11614 CAGCAGCGAAGGCGACAAGACGCTGCGCAAAGG 11646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618400845924640