Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq134 136 5e-27
seq302 127 3e-24
>seq134
Length=7744
Score = 136 bits (150), Expect = 5e-27
Identities = 408/628 (65%), Gaps = 4/628 (1%)
Strand=Plus/Minus
Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997
|||||| ||| || || |||||||| |||| | | || | | ||||| || | |
Sbjct 5179 TACTTTTCGTAAAGAGCCTCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCA 5120
Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057
| ||||| ||||||| ||||| ||| | |||||| |||||||| ||||| || ||
Sbjct 5119 TTGGGGCAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGT 5060
Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117
|||| || || ||| ||||| ||| ||| ||||||| | || || || |||
Sbjct 5059 GTCCAAAGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGG 5000
Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177
| ||||| || || | ||||| | |||||||||||| || || | |||| | |||
Sbjct 4999 AGGTCCAAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCC 4940
Query 119178 TTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234
|| | ||| |||||| ||||| || |||||| ||| || || || ||||||
Sbjct 4939 GGCCGTTTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATT 4880
Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294
|||| ||| || | || |||||||| || ||| ||| || | | |
Sbjct 4879 GGAACGATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATG 4820
Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354
||| |||| | ||||||||| || || |||||| || || || | | |
Sbjct 4819 CGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAAC 4760
Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414
|| |||| || || || || ||| |||| | |||| |||||||| | |||
Sbjct 4759 GTGTCGTAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATC 4700
Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG 119474
||||| || ||||| || ||||| || || || | || || |||| | |||
Sbjct 4699 TGAGGTTGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGA 4640
Query 119475 GACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 119534
||||| || ||||| || | ||| | || || || ||||| |||| |
Sbjct 4639 GACATGAGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCA 4580
Query 119535 ACCCGCATAAACATGTATTG-GGGTGTT 119561
|| ||||| | ||||| ||| ||| |||
Sbjct 4579 ACACGCATGATCATGTGTTGAGGGCGTT 4552
>seq302
Length=30871
Score = 127 bits (140), Expect = 3e-24
Identities = 305/453 (67%), Gaps = 10/453 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| ||||| || || ||||||||||| || || || ||| | ||| || |||||
Sbjct 11199 TAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTATCCATG 11258
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-TTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| ||||||||||| | ||||| | | || || | |||| |||||| ||
Sbjct 11259 AAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAAC-GAGGAGGCG 11317
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905
||| | |||| |||||||||| | |||| || || |||||| |||| || | ||
Sbjct 11318 ATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGCGCGAC 11377
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
||||||||| || ||| |||| ||| ||| || |||||||| | ||| |
Sbjct 11378 -TGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATCCTCT 11436
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACT 130022
| | ||| || ||| | | ||||| || || ||| || |||||| |
Sbjct 11437 CGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGA--CA-GGCAAAAT 11493
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| | ||||||||||| || || || || || || || ||||| ||||| |
Sbjct 11494 CAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCATAA 11553
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
|||| || ||||||| |||||| || | | || || || ||||||||| || || |
Sbjct 11554 GACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTCAA 11613
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| ||||| || | ||||||| |||||||
Sbjct 11614 CAGCAGCGAAGGCGACAAGACGCTGCGCAAAGG 11646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618400845924640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |