Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2446 235 2e-56 seq819 163 9e-35 seq4334 149 2e-30 seq4046 98.7 3e-15 seq134 98.7 3e-15 >seq2446 Length=49932 Score = 235 bits (260), Expect = 2e-56 Identities = 492/728 (68%), Gaps = 15/728 (2%) Strand=Plus/Minus Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262 |||| |||||||| ||||| || || || || || | | | | |||| || | | Sbjct 49072 TAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGCATCTATCGTGATGACCGCATCG 49013 Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322 |||| ||||| || || || |||||| | || || || || | |||||| || || || | Sbjct 49012 AAATCATTGCCAACGACCAGGGTAACCGGACCACACCCTCGTTCGTTGCTTTCACAGACA 48953 Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382 | ||||| | || |||||| ||||||| ||||||| || || |||| || || | Sbjct 48952 CAGAGCGCCTCATCGGTGATGCTGCAAAGAATCAAGTCGCCATGAACCCAAGCAACACAG 48893 Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAAT 349436 |||| || || ||||| || ||||| | ||||| | |||| || || | Sbjct 48892 TTTTCGACGCAAAGCGTCTCATTGGCCGCAAGTTCGCCGATGCTGAGG--TC----CAGT 48839 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 ||||| | || ||||| || || | | | || | || | || || || | ||| Sbjct 48838 CTGATATGAAGCATTTCCCCTTCAA-GATCATCGACAAAGC--TGGCAAGCCTGTCATTC 48782 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTT 349556 || | || | || || || || | || || || || || || || ||||| Sbjct 48781 AGATCGAGTTCAAGGGCGAGACCAAGGAGTTCACTCCTGAGGAGATCTCCTCCATGGTCC 48722 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | || |||| || | ||||| |||||| | |||| || || | | || || Sbjct 48721 TCACCAAGATGAGAGAGACCGCTGAGGCATATCTTGGTGGCACTGTCAACAACGCCGTCG 48662 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 ||||||| || ||||| || |||||| ||||||| || || || |||||||| || Sbjct 48661 TTACTGTCCCCGCCTACTTCAATGATTCCCAGCGCCAAGCTACCAAGGATGCTGGTCTCA 48602 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || | ||||| || | || || || ||||| || ||||| || ||||| || | Sbjct 48601 TTGCCGGTCTCAATGTCCTCCGTATCATCAACGAACCTACCGCTGCTGCTATTGCGTACG 48542 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | ||||| || | | || ||| ||| |||| ||||| || || |||||||||| Sbjct 48541 GTCTTGACAAGAAGGCCGAGGGTGAACGCAATGTTCTCATTTTCGACTTGGGTGGTGGTA 48482 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 |||| ||||| || || || || |||||||||| || || || || || | ||||||| Sbjct 48481 CTTTCGATGTCTCCCTCCTTACTATTGAAGAGGGCATCTTCGAGGTCAAGTCCACTGCTG 48422 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916 |||| || || | ||||| || || || ||||||||||| ||| || ||||| || | Sbjct 48421 GTGACACTCACTTGGGTGGTGAGGACTTCGATAATCGTCTTGTTAACCACTTTGTAAACG 48362 Query 349917 AATTTAAG 349924 |||| ||| Sbjct 48361 AATTCAAG 48354 Score = 84.2 bits (92), Expect = 7e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 183633 TTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCA 183692 || |||||||| || ||||| | | ||| || | || | | |||| || || ||| Sbjct 48343 TTGTGTTTTCTCTTGAATTCGTTTACAAAGTGGTTAACAAGACGATTATCGAAGTCCTCA 48402 Query 183693 CCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTT 183752 ||||| || || || || |||||||| | || || || || || || ||||||||| | Sbjct 48403 CCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCCTCTTCAATAGTA 48462 Query 183753 AAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 | | || ||||| || |||||||||||||| || ||| Sbjct 48463 AGGAGGGAGACATCGAAAGTACCACCACCCAAGTCGAAA 48501 >seq819 Length=4427 Score = 163 bits (180), Expect = 9e-35 Identities = 171/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || |||||||| || || || |||||||| || |||||||| Sbjct 1810 CATACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATC 1751 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || |||||||| || || |||||||| ||||| |||||||||||||| || Sbjct 1750 CGACAAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGG 1691 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || |||||||||||||| ||||| ||| || || || || || | ||| || | || Sbjct 1690 GGGGATCCCTTCTTTATCCTGGATTTT-GCTCTTCACGTTGTCGATGGTATCTGAAGATT 1632 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 | || || | || | ||||| || || || ||||| |||| Sbjct 1631 CCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAA 1590 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || ||||| | || | ||| ||||| ||| || ||||| || || || || Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||||| |||||||| || ||||| ||||||||||| || || |||||||| || || Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || || ||||| |||||| || ||||| | ||||| || || Sbjct 2142 ATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACC 2083 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || || || || || ||||| || || |||||||| Sbjct 2082 TCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 >seq4334 Length=62496 Score = 149 bits (164), Expect = 2e-30 Identities = 209/291 (72%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 || ||| ||||||| | ||||| | || || | ||| || ||||| |||||| Sbjct 45966 TCGTATTTAACCATGACCTCTTCAAGCGCCTTCACAAGCTTCCGCTGGATATATCCAGTT 46025 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | | ||| || || ||||||||||| | ||| |||||||| |||| ||||||||||| Sbjct 46026 TCAGCAGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATAGCATGGAAGAAA 46085 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 || |||||||| || || |||| || | | ||| |||||| ||| || | | | ||| Sbjct 46086 AACTCAGTAGGGGTGAGACCACGAAGATAAGAATTCTCAACAAAGCCACGAGACTCAGGC 46145 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACCCATATGGAATTCG 378422 || | ||||| || || | || ||||| ||||||| | | ||||| | ||||||| || Sbjct 46146 GAGTAATCATCCTTCGTGAAGTGTGGTAAGGTACGATATTTGAAACCGA-ATGGAATACG 46204 Query 378423 TTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAGCAATATT 378473 ||| || ||||| || || |||| ||| | |||||||| |||||| Sbjct 46205 TTTCCCTTCAACGGATTGCTGGCCAACCACAGCAGTCATTTGAGAAATATT 46255 >seq4046 Length=39127 Score = 98.7 bits (108), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 266274 ACTCATTGTGAAATTCATCCAAGTACATTATTAGGTATTT----TAGCATCTTGTATTCC 266329 ||||| ||||| |||||||| |||| | ||||||| | ||||||| ||||| Sbjct 6931 ACTCACTGTGAGATTCATCCCAGTATGATTCTAGGTATCTGTGCTAGCATC----ATTCC 6876 Query 266330 ATTTCCAGAACATAATCAAGCACCTCGTCTAACATATCAATGTGCAATGGGTAAACAGGC 266389 || || || || || ||| | |||||| ||||| |||| ||| ||||||||||| || Sbjct 6875 TTTCCCCGACCACAACCAATCTCCTCGTAACACATACCAATCTGCTATGGGTAAACAAGC 6816 Query 266390 TATGGGTATCTATGTTACAAATTTT 266414 ||||||| ||| ||||||||||| Sbjct 6815 TATGGGTGTCTTCCTTACAAATTTT 6791 >seq134 Length=7744 Score = 98.7 bits (108), Expect = 3e-15 Identities = 281/432 (65%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 206448 CTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGA 206507 |||||| | ||||| ||| || || || || |||| ||||| |||| || || || || Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863 Query 206508 AGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCC 206567 | |||||||||||| ||| | | ||| || || | ||| || || | | || Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACC 4803 Query 206568 AATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATC 206627 ||| || || || |||||||| ||||| || || || | ||||| || || Sbjct 4802 AATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTC 4743 Query 206628 AACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCC 206687 || ||| || | ||| | || | || || ||| | || ||| | || || || Sbjct 4742 AATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACC 4683 Query 206688 AGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACATTAAATTATAAGT 206747 ||||| || | ||||||| |||||| || || ||||||||||||| | ||||| || Sbjct 4682 GGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGT 4623 Query 206748 AGTTTTCACTTTTTCTAAATCATTTTCGTGTAAACAAATTGCTACACGTAACCACATATA 206807 | || || |||| ||||| | | || | | | || ||||| | ||| | Sbjct 4622 TTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTG 4563 Query 206808 TTGAGGTCTTTCAATTAtttttttGTTAATGTGCATTAAATATGCACGCTCAAGAGTTTT 206867 |||||| | |||| | ||| ||| || | | ||||| | ||||| ||||| || Sbjct 4562 TTGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTT 4503 Query 206868 AAAGCCAAAATA 206879 || || || || Sbjct 4502 GAATCCGAAGTA 4491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515168123308532