Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2446 235 2e-56
seq819 163 9e-35
seq4334 149 2e-30
seq4046 98.7 3e-15
seq134 98.7 3e-15
>seq2446
Length=49932
Score = 235 bits (260), Expect = 2e-56
Identities = 492/728 (68%), Gaps = 15/728 (2%)
Strand=Plus/Minus
Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262
|||| |||||||| ||||| || || || || || | | | | |||| || | |
Sbjct 49072 TAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGCATCTATCGTGATGACCGCATCG 49013
Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322
|||| ||||| || || || |||||| | || || || || | |||||| || || || |
Sbjct 49012 AAATCATTGCCAACGACCAGGGTAACCGGACCACACCCTCGTTCGTTGCTTTCACAGACA 48953
Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382
| ||||| | || |||||| ||||||| ||||||| || || |||| || || |
Sbjct 48952 CAGAGCGCCTCATCGGTGATGCTGCAAAGAATCAAGTCGCCATGAACCCAAGCAACACAG 48893
Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAAT 349436
|||| || || ||||| || ||||| | ||||| | |||| || || |
Sbjct 48892 TTTTCGACGCAAAGCGTCTCATTGGCCGCAAGTTCGCCGATGCTGAGG--TC----CAGT 48839
Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496
||||| | || ||||| || || | | | || | || | || || || | |||
Sbjct 48838 CTGATATGAAGCATTTCCCCTTCAA-GATCATCGACAAAGC--TGGCAAGCCTGTCATTC 48782
Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTT 349556
|| | || | || || || || | || || || || || || || |||||
Sbjct 48781 AGATCGAGTTCAAGGGCGAGACCAAGGAGTTCACTCCTGAGGAGATCTCCTCCATGGTCC 48722
Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616
| || |||| || | ||||| |||||| | |||| || || | | || ||
Sbjct 48721 TCACCAAGATGAGAGAGACCGCTGAGGCATATCTTGGTGGCACTGTCAACAACGCCGTCG 48662
Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676
||||||| || ||||| || |||||| ||||||| || || || |||||||| ||
Sbjct 48661 TTACTGTCCCCGCCTACTTCAATGATTCCCAGCGCCAAGCTACCAAGGATGCTGGTCTCA 48602
Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736
|||| || | ||||| || | || || || ||||| || ||||| || ||||| || |
Sbjct 48601 TTGCCGGTCTCAATGTCCTCCGTATCATCAACGAACCTACCGCTGCTGCTATTGCGTACG 48542
Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796
| ||||| || | | || ||| ||| |||| ||||| || || ||||||||||
Sbjct 48541 GTCTTGACAAGAAGGCCGAGGGTGAACGCAATGTTCTCATTTTCGACTTGGGTGGTGGTA 48482
Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856
|||| ||||| || || || || |||||||||| || || || || || | |||||||
Sbjct 48481 CTTTCGATGTCTCCCTCCTTACTATTGAAGAGGGCATCTTCGAGGTCAAGTCCACTGCTG 48422
Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916
|||| || || | ||||| || || || ||||||||||| ||| || ||||| || |
Sbjct 48421 GTGACACTCACTTGGGTGGTGAGGACTTCGATAATCGTCTTGTTAACCACTTTGTAAACG 48362
Query 349917 AATTTAAG 349924
|||| |||
Sbjct 48361 AATTCAAG 48354
Score = 84.2 bits (92), Expect = 7e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 183633 TTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCA 183692
|| |||||||| || ||||| | | ||| || | || | | |||| || || |||
Sbjct 48343 TTGTGTTTTCTCTTGAATTCGTTTACAAAGTGGTTAACAAGACGATTATCGAAGTCCTCA 48402
Query 183693 CCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTT 183752
||||| || || || || |||||||| | || || || || || || ||||||||| |
Sbjct 48403 CCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCCTCTTCAATAGTA 48462
Query 183753 AAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791
| | || ||||| || |||||||||||||| || |||
Sbjct 48463 AGGAGGGAGACATCGAAAGTACCACCACCCAAGTCGAAA 48501
>seq819
Length=4427
Score = 163 bits (180), Expect = 9e-35
Identities = 171/222 (77%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || |||||||| || || || |||||||| || ||||||||
Sbjct 1810 CATACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATC 1751
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || || || |||||||| || || |||||||| ||||| |||||||||||||| ||
Sbjct 1750 CGACAAGGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGG 1691
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
|| || |||||||||||||| ||||| ||| || || || || || | ||| || | ||
Sbjct 1690 GGGGATCCCTTCTTTATCCTGGATTTT-GCTCTTCACGTTGTCGATGGTATCTGAAGATT 1632
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727
| || || | || | ||||| || || || ||||| ||||
Sbjct 1631 CCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTCACAA 1590
Score = 134 bits (148), Expect = 4e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
||||| || ||||| | || | ||| ||||| ||| || ||||| || || || ||
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||||| |||||||| || ||||| ||||||||||| || || |||||||| || ||
Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| ||||| || || || ||||| |||||| || ||||| | ||||| || ||
Sbjct 2142 ATCCCTTCCTTGTCTTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACC 2083
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| | || || || || || ||||| || || ||||||||
Sbjct 2082 TCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
>seq4334
Length=62496
Score = 149 bits (164), Expect = 2e-30
Identities = 209/291 (72%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243
|| ||| ||||||| | ||||| | || || | ||| || ||||| ||||||
Sbjct 45966 TCGTATTTAACCATGACCTCTTCAAGCGCCTTCACAAGCTTCCGCTGGATATATCCAGTT 46025
Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303
| | ||| || || ||||||||||| | ||| |||||||| |||| |||||||||||
Sbjct 46026 TCAGCAGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATAGCATGGAAGAAA 46085
Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363
|| |||||||| || || |||| || | | ||| |||||| ||| || | | | |||
Sbjct 46086 AACTCAGTAGGGGTGAGACCACGAAGATAAGAATTCTCAACAAAGCCACGAGACTCAGGC 46145
Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACCCATATGGAATTCG 378422
|| | ||||| || || | || ||||| ||||||| | | ||||| | ||||||| ||
Sbjct 46146 GAGTAATCATCCTTCGTGAAGTGTGGTAAGGTACGATATTTGAAACCGA-ATGGAATACG 46204
Query 378423 TTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAGCAATATT 378473
||| || ||||| || || |||| ||| | |||||||| ||||||
Sbjct 46205 TTTCCCTTCAACGGATTGCTGGCCAACCACAGCAGTCATTTGAGAAATATT 46255
>seq4046
Length=39127
Score = 98.7 bits (108), Expect = 3e-15
Identities = 109/145 (75%), Gaps = 8/145 (6%)
Strand=Plus/Minus
Query 266274 ACTCATTGTGAAATTCATCCAAGTACATTATTAGGTATTT----TAGCATCTTGTATTCC 266329
||||| ||||| |||||||| |||| | ||||||| | ||||||| |||||
Sbjct 6931 ACTCACTGTGAGATTCATCCCAGTATGATTCTAGGTATCTGTGCTAGCATC----ATTCC 6876
Query 266330 ATTTCCAGAACATAATCAAGCACCTCGTCTAACATATCAATGTGCAATGGGTAAACAGGC 266389
|| || || || || ||| | |||||| ||||| |||| ||| ||||||||||| ||
Sbjct 6875 TTTCCCCGACCACAACCAATCTCCTCGTAACACATACCAATCTGCTATGGGTAAACAAGC 6816
Query 266390 TATGGGTATCTATGTTACAAATTTT 266414
||||||| ||| |||||||||||
Sbjct 6815 TATGGGTGTCTTCCTTACAAATTTT 6791
>seq134
Length=7744
Score = 98.7 bits (108), Expect = 3e-15
Identities = 281/432 (65%), Gaps = 0/432 (0%)
Strand=Plus/Minus
Query 206448 CTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGA 206507
|||||| | ||||| ||| || || || || |||| ||||| |||| || || || ||
Sbjct 4922 CTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGA 4863
Query 206508 AGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCC 206567
| |||||||||||| ||| | | ||| || || | ||| || || | | ||
Sbjct 4862 GGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACC 4803
Query 206568 AATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATC 206627
||| || || || |||||||| ||||| || || || | ||||| || ||
Sbjct 4802 AATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTC 4743
Query 206628 AACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCC 206687
|| ||| || | ||| | || | || || ||| | || ||| | || || ||
Sbjct 4742 AATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACC 4683
Query 206688 AGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACATTAAATTATAAGT 206747
||||| || | ||||||| |||||| || || ||||||||||||| | ||||| ||
Sbjct 4682 GGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGT 4623
Query 206748 AGTTTTCACTTTTTCTAAATCATTTTCGTGTAAACAAATTGCTACACGTAACCACATATA 206807
| || || |||| ||||| | | || | | | || ||||| | ||| |
Sbjct 4622 TTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTG 4563
Query 206808 TTGAGGTCTTTCAATTAtttttttGTTAATGTGCATTAAATATGCACGCTCAAGAGTTTT 206867
|||||| | |||| | ||| ||| || | | ||||| | ||||| ||||| ||
Sbjct 4562 TTGAGGGCGTTCAGCAACTTTGCCGTTGATTCGAAGCAAATAAGACCGCTCTAGAGTCTT 4503
Query 206868 AAAGCCAAAATA 206879
|| || || ||
Sbjct 4502 GAATCCGAAGTA 4491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515168123308532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |