Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq134 147 2e-30 >seq134 Length=7744 Score = 147 bits (162), Expect = 2e-30 Identities = 236/334 (71%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 78855 GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCG 78914 || ||||| | |||| |||| || ||||||||||| ||| ||| || || || || || Sbjct 5677 GCAGAGCA--AGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGACG 5620 Query 78915 CATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 | |||||| || || ||||| ||| || ||||||||||||||| ||| || Sbjct 5619 GAAGTTGCTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAAG 5560 Query 78975 GTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTT 79034 |||||| ||| || |||| || || | | ||| |||||||| | | || | Sbjct 5559 GTTACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATACTCCCCTCGTAC 5500 Query 79035 --GATGAAAGTCGGTAGGCACAGCGAT----GCCAGGTTGCACACGGCCGTCTCGTCCGG 79088 ||| | | |||||||| ||| || |||| ||||||||| || ||| || || Sbjct 5499 AGGATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTGG 5440 Query 79089 GCTAGAAAC-CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCT 79147 | || || ||| ||||| || ||||||| ||||| | || ||||| | ||||| Sbjct 5439 -CGAGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCT 5381 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 ||||||||||||||||||| || ||||||||||| Sbjct 5380 TCTGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTA 5347 Score = 125 bits (138), Expect = 8e-24 Identities = 378/581 (65%), Gaps = 2/581 (0%) Strand=Plus/Minus Query 79309 CCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCC 79368 ||||||||||| | || ||| || || | ||||| | || ||| || | | Sbjct 5149 CCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTCCATTCGCCATTT 5090 Query 79369 TTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAA 79428 |||||||| || ||| ||||| || || |||| || || ||| || || || Sbjct 5089 TTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAAAGATCACGAGCC 5030 Query 79429 CGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGC 79488 || | || || | || |||||| ||| || || | || || | || || | |||| Sbjct 5029 CGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAAATATCAGTGTGC 4970 Query 79489 CACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTAC 79548 ||||| || ||||| || ||||| | ||| || || || ||||||| ||| || Sbjct 4969 CACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCCTGGTCGACATAT 4910 Query 79549 CGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTC 79608 | || |||||||||||||| || ||||| || ||||| |||| | | || || || Sbjct 4909 CTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAGGATCCATTTGTT 4850 Query 79609 CCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGA 79667 ||| || | ||| | | |||||| | | | || || || || || || | Sbjct 4849 CCGGCAATGTAAGAGCCGGTGCCACGAATG-CGGTGAATGTTGAGACCAATACCACCAGC 4791 Query 79668 CCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTC 79727 ||| || || || || ||| | ||| ||||| || ||||| || ||| || Sbjct 4790 AGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCAATACTGTCCTC 4731 Query 79728 CTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 |||||| ||| |||||||| | |||||| || | |||||||| ||||| || Sbjct 4730 CTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCGGCATTGAAAAG 4671 Query 79788 GGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCG 79847 ||| || | || ||||||||||| ||||| ||| || | || || || |||| Sbjct 4670 GGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTTTCGATGACCTT 4611 Query 79848 CGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 | | || || || || || ||||| || || ||||||| Sbjct 4610 CTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGA 4570 Score = 122 bits (134), Expect = 1e-22 Identities = 358/548 (65%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||| || | ||||||| || || ||||| || ||||| || || | | ||| Sbjct 4557 CCTCAACACATGATCATGCGTGTTGCTGTCGGAATTCATGGAGATGATGTAGAGAAGGTC 4616 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 ||| || || |||| ||| || || ||||||||||| || | || ||||||||| Sbjct 4617 ATCGAAACCTATAACCTCATGTCTCAAAAATTCTTCACGCATGCTTCTCCTACCCTTTTC 4676 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 || |||||||| | || |||||| | || ||||| | | |||||||| ||| Sbjct 4677 AATGCCGGTACCCCGCAACCTCAGATGGCTTCGTGCTTCCTTATCGACATGAAGGAGGAC 4736 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||| || ||||| ||| | ||| || || || || ||| | || Sbjct 4737 AGTATTGAGGGTATTTACGACACGTTGAAGACTTGTGCCTTGATTTCAAAGACTGCTGGT 4796 Query 19343 GGTATCGGGATC--CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGA 19400 ||||| || || || | || || || | | | || | || || || | Sbjct 4797 GGTATTGGTCTCAACATTCACCGCAT-TCGTGGC-ACCGGCTCTTACATTGCCGGAACAA 4854 Query 19401 ACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 | ||| | |||| ||||| |||||||| ||||| ||||||||||| || || || | Sbjct 4855 ATGGATCCTCAAACGGAATCGTTCCAATGCTGCGCGTTTTCAACAACACTGCTAGATATG 4914 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| || ||||| ||| | ||||| || || ||||| || |||||| Sbjct 4915 TCGACCAGGGAGGTAATAAACGGCCGGGAGCTTTCGCTATTTATCTCGAACCGTGGCACA 4974 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | || | | || ||| | || || || |||||| || | || || | || || Sbjct 4975 CTGATATTTTCGAATTCTTGGACCTCCGTAAGAACCACGGAAAGGAAGAAGTTCGGGCTC 5034 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 | || || ||| || | |||| || || || || ||| || |||||||| | | Sbjct 5035 GTGATCTTTTCCTAGCTCTTTGGACACCTGATCTCTTTATGAAGCGTGTTGAGAAAAATG 5094 Query 19641 AAGAATGG 19648 |||||| Sbjct 5095 GCGAATGG 5102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548494329447360