Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq134 132 5e-26 seq302 111 2e-19 seq768 91.5 2e-13 >seq134 Length=7744 Score = 132 bits (146), Expect = 5e-26 Identities = 343/520 (66%), Gaps = 2/520 (0%) Strand=Plus/Plus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 ||||| | ||| ||||| || | || ||||| ||||| || ||||| || |||||| Sbjct 4641 CAAAAATTCTTCACGCATGCTTCTCCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAG 4700 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 ||| | |||||||| | | |||||||| ||| || || || || ||||| ||| Sbjct 4701 ATGGCTTCGTGCTTCCTTATCGACATGAAGGAGGACAGTATTGAGGGTATTTACGACACG 4760 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAA 53442 | ||| |||||| || || ||| | |||||||| ||| || || | | | Sbjct 4761 TTGAAGACTTGTGCCTTGATTTCAAAGACTGCTGGTGGTATTGGTCTCAACATTCACCG- 4819 Query 53443 CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 | | |||| | |||| | || || || || || | | | |||||||| || Sbjct 4820 CATTCGTGGCACCGGCTCTTACATTGCCGGAACAAATGGATCCTCAAACGGAATCGTTCC 4879 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| ||||| ||||||||||| || | || ||| ||||||| ||| || || Sbjct 4880 AATGCTGCGCGTTTTCAACAACACTGCTAGATATGTCGACCAGGGAGGTAATAAACGGCC 4939 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 ||| | ||||| || || ||||| ||||||||| | || ||| | || || | || || Sbjct 4940 GGGAGCTTTCGCTATTTATCTCGAACCGTGGCACACTGATATTTTCGAATTCTTGGACCT 4999 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGAT 53682 ||| ||| || || | ||||| | || ||||| || || |||||| |||| Sbjct 5000 CCGTAAGAACCACGGAAAGGAAGAAGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGAC 5059 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || || ||||| ||| | || ||||| | | || ||| || | ||||| || Sbjct 5060 ACCTGATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAA 5119 Query 53743 CGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 || || ||| | || |||||| |||| |||||| Sbjct 5120 TGAAGCGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTT 5159 >seq302 Length=30871 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||||| ||| ||||||||||| || || ||||||| ||| ||||| | | | Sbjct 11526 TCGTTAGAAAACGTAAGACCAGGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCG 11585 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||| || ||||||||||||||||| ||| || ||||||||||| || ||||| || Sbjct 11586 AAGGATCCGCTGAAGAAGATGCCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAA 11644 >seq768 Length=27437 Score = 91.5 bits (100), Expect = 2e-13 Identities = 183/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGACCCGTAGAC-CTTTC- 152869 |||||||||||||| ||| | |||||||| ||| | | | ||| | ||| || ||||| Sbjct 5846 TCGGTCATGATCATGAGATGTCCGTAGCGGAGG-CCCTTGGTG-TCGGTATACTCTTTCT 5903 Query 152870 CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTT 152929 || || || || |||| ||||||| ||| | |||| ||| | || | ||| | Sbjct 5904 TGTGCTGTAGTCCAAGGAAGTTTTTGATGTTCTGGATTTCCGTATTTTTGGATATCTGAT 5963 Query 152930 TCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGT 152989 || | ||| ||||| || ||| || |||||||||| || || || || ||||| | | Sbjct 5964 CAACAGAGGCGTCCCGGACGTTGAGCAGCTTTCCCCGTAGAGGGAATACACCGAA-GAGA 6022 Query 152990 TGCGG-CCTACAA-CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGT 153047 | || || |||| |||| ||||||| || || | | || || || || || || || Sbjct 6023 TCAGGCCCAACAATAGCTC-GACCGGCCATGGCTAATCCCTTTGCAGAATCTCCTTCAGT 6081 Query 153048 GATAATAAGCGTACAGTCGTG 153068 | ||||| ||||||| ||| Sbjct 6082 CAGGATAAGGGTACAGTGGTG 6102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547185602151200