Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq134 132 5e-26
seq302 111 2e-19
seq768 91.5 2e-13
>seq134
Length=7744
Score = 132 bits (146), Expect = 5e-26
Identities = 343/520 (66%), Gaps = 2/520 (0%)
Strand=Plus/Plus
Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323
||||| | ||| ||||| || | || ||||| ||||| || ||||| || ||||||
Sbjct 4641 CAAAAATTCTTCACGCATGCTTCTCCTACCCTTTTCAATGCCGGTACCCCGCAACCTCAG 4700
Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383
||| | |||||||| | | |||||||| ||| || || || || ||||| |||
Sbjct 4701 ATGGCTTCGTGCTTCCTTATCGACATGAAGGAGGACAGTATTGAGGGTATTTACGACACG 4760
Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAA 53442
| ||| |||||| || || ||| | |||||||| ||| || || | | |
Sbjct 4761 TTGAAGACTTGTGCCTTGATTTCAAAGACTGCTGGTGGTATTGGTCTCAACATTCACCG- 4819
Query 53443 CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502
| | |||| | |||| | || || || || || | | | |||||||| ||
Sbjct 4820 CATTCGTGGCACCGGCTCTTACATTGCCGGAACAAATGGATCCTCAAACGGAATCGTTCC 4879
Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562
||||| ||||| ||||||||||| || | || ||| ||||||| ||| || ||
Sbjct 4880 AATGCTGCGCGTTTTCAACAACACTGCTAGATATGTCGACCAGGGAGGTAATAAACGGCC 4939
Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622
||| | ||||| || || ||||| ||||||||| | || ||| | || || | || ||
Sbjct 4940 GGGAGCTTTCGCTATTTATCTCGAACCGTGGCACACTGATATTTTCGAATTCTTGGACCT 4999
Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGAT 53682
||| ||| || || | ||||| | || ||||| || || |||||| ||||
Sbjct 5000 CCGTAAGAACCACGGAAAGGAAGAAGTTCGGGCTCGTGATCTTTTCCTAGCTCTTTGGAC 5059
Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742
|| || ||||| ||| | || ||||| | | || ||| || | ||||| ||
Sbjct 5060 ACCTGATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTTGCCCCAA 5119
Query 53743 CGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
|| || ||| | || |||||| |||| ||||||
Sbjct 5120 TGAAGCGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTT 5159
>seq302
Length=30871
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849
|| || ||||||| ||| ||||||||||| || || ||||||| ||| ||||| | | |
Sbjct 11526 TCGTTAGAAAACGTAAGACCAGGCATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCG 11585
Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||||| || ||||||||||||||||| ||| || ||||||||||| || ||||| ||
Sbjct 11586 AAGGATCCGCTGAAGAAGATGCCTTCAACAGCAGCGAAGGCGACAAGACGCTGCGCAAA 11644
>seq768
Length=27437
Score = 91.5 bits (100), Expect = 2e-13
Identities = 183/261 (70%), Gaps = 8/261 (3%)
Strand=Plus/Plus
Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGACCCGTAGAC-CTTTC- 152869
|||||||||||||| ||| | |||||||| ||| | | | ||| | ||| || |||||
Sbjct 5846 TCGGTCATGATCATGAGATGTCCGTAGCGGAGG-CCCTTGGTG-TCGGTATACTCTTTCT 5903
Query 152870 CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTT 152929
|| || || || |||| ||||||| ||| | |||| ||| | || | ||| |
Sbjct 5904 TGTGCTGTAGTCCAAGGAAGTTTTTGATGTTCTGGATTTCCGTATTTTTGGATATCTGAT 5963
Query 152930 TCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGT 152989
|| | ||| ||||| || ||| || |||||||||| || || || || ||||| | |
Sbjct 5964 CAACAGAGGCGTCCCGGACGTTGAGCAGCTTTCCCCGTAGAGGGAATACACCGAA-GAGA 6022
Query 152990 TGCGG-CCTACAA-CGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGT 153047
| || || |||| |||| ||||||| || || | | || || || || || || ||
Sbjct 6023 TCAGGCCCAACAATAGCTC-GACCGGCCATGGCTAATCCCTTTGCAGAATCTCCTTCAGT 6081
Query 153048 GATAATAAGCGTACAGTCGTG 153068
| ||||| ||||||| |||
Sbjct 6082 CAGGATAAGGGTACAGTGGTG 6102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547185602151200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |