Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq819 145 9e-30 seq1424 125 8e-24 seq302 109 6e-19 seq1691 107 2e-18 seq134 84.2 2e-11 >seq819 Length=4427 Score = 145 bits (160), Expect = 9e-30 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||||||||| |||||||||||||| || || || | Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAA--AGCT 1865 Query 27466 --GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||| | ||| || || || ||||| || || || ||||| || || |||||| Sbjct 1866 CAGATACCATCGACAACGTTAAAAGC-AAAATCCAAGATAAAGAGGGTATCCCACCAGAC 1924 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || || || || || || || || || ||||| | || || || | ||||| Sbjct 1925 CAGCAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTAC 1984 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||||| |||||||| ||||| || ||| | || ||||| || || Sbjct 1985 AATATCCAAAAAGAATCCACACTTCACCTTGTCCTTCGCCTTCGTGGCGG 2034 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| ||||| || || || || |||||||||||||||| || | | ||| Sbjct 1268 TTACCGGGAAGACCATCACACTCGACGTTGAGTCAGGTGATACTATCGACGCGGTTAAGT 1327 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | |||||||| ||||||||||| || ||||| ||||| ||||| || || || || || | Sbjct 1328 CCAAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCA 1387 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| || ||||| | ||||||||| | || || ||| |||| ||||| || || || | Sbjct 1388 AGCAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCC 1447 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || | ||||| || || ||| Sbjct 1448 ACTTGGTTCTCCGTCTCCGTGGAGGA 1473 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || ||||| || || || || ||||| ||| | Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095 Query 27466 GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || || ||||| || |||||||| || || || ||||| || Sbjct 2096 GACACAATTGACAACGTAAAAAGC-AAAATCCAAGACAAGGAAGGGATCCCACCAGATCA 2154 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || ||||||||||| || || || |||| ||| || || | ||||| || Sbjct 2155 GCAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAA 2214 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| |||||| ||| | || ||| | | || ||||| || Sbjct 2215 CATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGGCCA 2265 >seq1424 Length=24560 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || ||||||||||| ||||| | || | ||| Sbjct 23628 CTTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCAT 23687 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| |||||| ||||| |||||||| || || || ||||||||||| | Sbjct 23688 CGACAATGTCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATT 23747 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATAATGTCCAAA 27592 || || || || || || || ||||||| || || | |||| || ||||| |||||| Sbjct 23748 GATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGC-GATTATAACATCCAAA 23806 Query 27593 AGGAATCCACT 27603 ||| | |||| Sbjct 23807 AGGTACGCACT 23817 >seq302 Length=30871 Score = 109 bits (120), Expect = 6e-19 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGA-TGAA-TCGTGG-GTCGTCGTTTGGTCAGCGT 64719 || || ||||| ||||||||||| |||| |||| | || ||| | |||| |||||| Sbjct 11692 AAGAAAGCTGATTGGGCCATCCGATGGATTGAAGACAAGGAGTCTACCTTTGCGCAGCGT 11633 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || || || ||| ||||| || ||||| || || ||| ||| || ||| Sbjct 11632 CTTGTCGCCTTCGCTGCTGTTGAAGGCATCTTCTTCAGCGGATCCTTCGCTTCAATCTTC 11573 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || || || || || ||||| ||||| ||||||| |||||||| || ||||| Sbjct 11572 TGGCTGAAGAAACGCGGTCTTATGCCTGGTCTTACGTTTTCTAACGAGCTTATTTCTCGT 11513 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| | ||| || ||||| Sbjct 11512 GACGAGGGCTTACACACTGATTTTGC 11487 >seq1691 Length=23441 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||| || | || || ||||| || || || ||| Sbjct 9107 GACAAGGAGGGCATTCCCCCCGACCAGCAACGCTTGATCTTCGCTGGCAAACAGCTTGAG 9048 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | |||||||| | ||||| || ||||||||||||| || ||||| || || || Sbjct 9047 GACGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCGACCCTTCACCTCGTGCTG 8988 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || ||||| Sbjct 8987 CGTCTGCGTGGTGG 8974 >seq134 Length=7744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 ||||||| |||||||| || ||||| || | | |||| | ||| || |||||| Sbjct 5471 GACGCCAAGTTGCACACTGCAACCTCATCTGGCGAGCAATACTCAATGATCTCGGTGCAC 5412 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | ||||| ||||||| || ||||| |||||||| ||| |||||||||||||| Sbjct 5411 AGGTTAGAGCTTCTAATTGTGCCTAGGTTCTTCTGGTTGCTCTTCTCGTTGCAAGCGTCC 5352 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTC 81056 ||||| ||| | ||| |||| ||||| Sbjct 5351 TTGTAAAGCATAAAGGGGTTACCAGTCTC 5323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570278719257280