Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq819 158 8e-34
seq1691 84.2 1e-11
>seq819
Length=4427
Score = 158 bits (174), Expect = 8e-34
Identities = 165/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553
||||||||||||||||||||||||||| |||||||| || || ||||| ||||| | ||
Sbjct 2248 CAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATC 2189
Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613
||| || |||||||| ||||| || | ||||| || || || || | || ||||||||
Sbjct 2188 TTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTC 2129
Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672
| ||| ||| |||| ||| | ||||||||| |||||| || |||| || || |
Sbjct 2128 TTGGAT-TTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGG 2070
Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || | |||||||| || ||||||||
Sbjct 2069 TTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 86.0 bits (94), Expect = 4e-12
Identities = 106/144 (74%), Gaps = 1/144 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| || |||||| || || || ||||| || || || ||
Sbjct 1463 AGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAGGGTACGA 1404
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || ||||| || || | ||||||||||| || || | ||||||
Sbjct 1403 CCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCC 1344
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC 34632
|||||| ||| ||| | |||||
Sbjct 1343 TTGTCT-TGAATTTTGGACTTAAC 1321
>seq1691
Length=23441
Score = 84.2 bits (92), Expect = 1e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||| | || || || |||||||| ||||| || || ||||| || ||
Sbjct 8983 AGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGG 9042
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| ||||| || || || || || || || ||||| || || | ||||||
Sbjct 9043 CCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCC 9102
Query 34609 TTGTCTGTG 34617
|||||||||
Sbjct 9103 TTGTCTGTG 9111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314712553851452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |