Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq819 158 8e-34 seq1691 84.2 1e-11 >seq819 Length=4427 Score = 158 bits (174), Expect = 8e-34 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||||||||||||||||||||||||||| |||||||| || || ||||| ||||| | || Sbjct 2248 CAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATC 2189 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| || |||||||| ||||| || | ||||| || || || || | || |||||||| Sbjct 2188 TTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTC 2129 Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | ||| ||| |||| ||| | ||||||||| |||||| || |||| || || | Sbjct 2128 TTGGAT-TTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGG 2070 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || | |||||||| || |||||||| Sbjct 2069 TTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || || || ||||| || || || || Sbjct 1463 AGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAGGGTACGA 1404 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || | ||||||||||| || || | |||||| Sbjct 1403 CCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCC 1344 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC 34632 |||||| ||| ||| | ||||| Sbjct 1343 TTGTCT-TGAATTTTGGACTTAAC 1321 >seq1691 Length=23441 Score = 84.2 bits (92), Expect = 1e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | || || || |||||||| ||||| || || ||||| || || Sbjct 8983 AGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGG 9042 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| ||||| || || || || || || || ||||| || || | |||||| Sbjct 9043 CCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCC 9102 Query 34609 TTGTCTGTG 34617 ||||||||| Sbjct 9103 TTGTCTGTG 9111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314712553851452