Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq819 136 3e-27 seq1424 84.2 2e-11 >seq819 Length=4427 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| ||||| | || || || || || || || Sbjct 2036 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCT 2095 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 2096 GACACAATTGACAACGTAAAAAGCAAAATCCAAGACAAGGAAGGGATCCCACCAGATCAG 2155 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||||| | || | || || ||||| | ||||| | |||| || |||| || ||||| Sbjct 2156 CAGCGACTTATCTTTGCTGGTAAACAGCTAGAAGA-TGGTCGAACGCTTTCGGACTACAA 2214 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||| || | |||||||| ||| | |||||||||||| Sbjct 2215 CATTCAGAAGGAGAGCACTCTCCATTTGGTGTTGAGATTGCGGGGTGGC 2263 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || || |||||||| |||||||||||||||| ||| || Sbjct 1808 ATGCAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCA 1867 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||| ||||| ||||| || || ||||| || || Sbjct 1868 GATACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCAG 1927 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || ||||| | || ||| | || | ||||| ||||| Sbjct 1928 CAACGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAAT 1987 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| || || || Sbjct 1988 ATCCAAAAAGAATCCAC 2004 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 |||||||||||||| || || || || || || |||||||| | || | ||||||||| Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| || ||| | ||||||||||| || || |||||||| ||| | || Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCAC 1449 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | ||| | || || || || Sbjct 1450 TTGGTTCTCCGTCTCCGTGGAGGAAT 1475 >seq1424 Length=24560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || |||||| | || |||||||| || || | |||| | || Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||||| || || || || || || |||||||| || ||||| || Sbjct 23689 GACAATGTCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATTG 23748 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | |||||||||||| | || || | ||| || |||||| ||||| |||||| Sbjct 23749 ATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAAG 23808 Query 27177 G 27177 | Sbjct 23809 G 23809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434894240282880