Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq819 167 5e-36
seq1424 129 1e-24
seq1691 98.7 2e-15
>seq819
Length=4427
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | |||||||||||||| ||||| ||||||||||| || || || | || ||
Sbjct 2029 ACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGT 1970
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||| || |||||||||||||| ||||| ||||| || || | ||
Sbjct 1969 TCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACC 1910
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| || || ||||| || ||| ||||| |||||||| || |||||||| || || ||
Sbjct 1909 CTCTTTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAG 1850
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || || || || || || |||||||| || | ||||||
Sbjct 1849 AGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 158 bits (174), Expect = 3e-33
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || || || |||||||||||||||||||||| | ||| | ||||||
Sbjct 1791 AGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCT 1732
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || ||||| || || || || | ||||| || |||
Sbjct 1731 TCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCC 1672
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || |||||||| |||||||| || || ||| ||||| | ||||| |||
Sbjct 1671 TGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTC 1612
Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104
|| || ||||| || || ||||
Sbjct 1611 TTGCCAGTGAGGGTTTTCACAA 1590
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| |||||| ||| || || ||||| || |||| ||| || | |||||||| |||||
Sbjct 2238 TGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTGT 2179
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || |||||||| || || || || || || | ||||||||||| ||||| ||
Sbjct 2178 TTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATTTTG 2119
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| ||||| || || ||||||||||| || ||||| || ||||| || || || ||
Sbjct 2118 CTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTTTTGCCAGTC 2059
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
||||| || || || | ||||||
Sbjct 2058 AGAGTTTTCACGAAGATCTGCAT 2036
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | ||| || || ||||| || ||||| || ||||| | ||
Sbjct 1470 TCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAG 1411
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || || || ||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1410 GGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGAT 1351
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| |||||||| || || || || || ||||| || ||| ||||| ||
Sbjct 1350 ACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACGTC 1291
Query 211070 GAGAGTGATCGTCTTTCCCGT 211090
||| ||||| ||||| || ||
Sbjct 1290 GAGTGTGATGGTCTTCCCGGT 1270
>seq1424
Length=24560
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||||||||| ||| |||| ||||| || ||||| ||||| ||||||||
Sbjct 23807 TTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATC 23748
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| || || | || ||||| |||||||| || || || || |||
Sbjct 23747 AATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTCG 23688
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| | || ||||| |||||||| ||||| |||||||| ||||| || ||
Sbjct 23687 ATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 23629
>seq1691
Length=23441
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || |||||||| || || || ||||||||||| || || | |||||| | || ||
Sbjct 8989 AGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCC 9048
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||| ||||| |||||||| | |||||| ||||| || |||| || ||||||||
Sbjct 9049 TCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC 9107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159085999334060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |