Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq819 167 5e-36 seq1424 129 1e-24 seq1691 98.7 2e-15 >seq819 Length=4427 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||| ||||| ||||||||||| || || || | || || Sbjct 2029 ACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGT 1970 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||| || |||||||||||||| ||||| ||||| || || | || Sbjct 1969 TCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACC 1910 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || || || ||||| || ||| ||||| |||||||| || |||||||| || || || Sbjct 1909 CTCTTTATCTTGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAG 1850 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || || |||||||| || | |||||| Sbjct 1849 AGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 158 bits (174), Expect = 3e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || || |||||||||||||||||||||| | ||| | |||||| Sbjct 1791 AGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCT 1732 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || ||||| || || || || | ||||| || ||| Sbjct 1731 TCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCC 1672 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||||| |||||||| || || ||| ||||| | ||||| ||| Sbjct 1671 TGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTC 1612 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 || || ||||| || || |||| Sbjct 1611 TTGCCAGTGAGGGTTTTCACAA 1590 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||| ||| || || ||||| || |||| ||| || | |||||||| ||||| Sbjct 2238 TGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTGT 2179 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || |||||||| || || || || || || | ||||||||||| ||||| || Sbjct 2178 TTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATTTTG 2119 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||| || || ||||||||||| || ||||| || ||||| || || || || Sbjct 2118 CTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTTTTGCCAGTC 2059 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | |||||| Sbjct 2058 AGAGTTTTCACGAAGATCTGCAT 2036 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || || ||||| || ||||| || ||||| | || Sbjct 1470 TCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAG 1411 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || ||||||||||| |||||||||||||| |||||||||||||| | Sbjct 1410 GGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGAT 1351 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || || || || || ||||| || ||| ||||| || Sbjct 1350 ACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACGTC 1291 Query 211070 GAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| ||||| || || Sbjct 1290 GAGTGTGATGGTCTTCCCGGT 1270 >seq1424 Length=24560 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| ||| |||| ||||| || ||||| ||||| |||||||| Sbjct 23807 TTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATC 23748 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || || | || ||||| |||||||| || || || || ||| Sbjct 23747 AATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTCG 23688 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| | || ||||| |||||||| ||||| |||||||| ||||| || || Sbjct 23687 ATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 23629 >seq1691 Length=23441 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || || || ||||||||||| || || | |||||| | || || Sbjct 8989 AGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCC 9048 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||| ||||| |||||||| | |||||| ||||| || |||| || |||||||| Sbjct 9049 TCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC 9107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159085999334060