Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq819 107 2e-18 seq1424 82.4 7e-11 >seq819 Length=4427 Score = 107 bits (118), Expect = 2e-18 Identities = 158/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || |||||||| || || || || || || | ||| ||||| | || Sbjct 2247 AACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCT 2188 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || |||||||| || ||||| ||||| |||||||| || |||||| | || || ||||| Sbjct 2187 TCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCT-TCCTTGTC 2129 Query 39192 CATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGA 39247 |||||| ||| | ||| | | | || || ||| ||| || |||| |||| Sbjct 2128 TTGGATTTTGCTTTTTA-CGTTGTCAATTGTGTCAGAGCT---CTCGACCTCCAGTGTGA 2073 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || ||||| ||||| || ||||| ||||| Sbjct 2072 TGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| ||||| || |||| || ||||| |||| ||||||||||| || || || Sbjct 1998 TCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAG 1939 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| || |||||||| |||||| | | |||||| || |||||| ||| | ||| Sbjct 1938 ATAAGTCGTTGCTGGTCTGGTGGG-ATACCCTCTTTATCTTGGATTTT-GCTTTTAACGT 1881 Query 39213 CG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268 | | | ||||| ||| || || || | || ||| |||| || || || || | Sbjct 1880 TGTCGATGGTATCTGAGCT---TTCGACTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCT 1824 Query 39269 TAACAAAGATTTGCAT 39284 | || ||||| ||||| Sbjct 1823 TTACGAAGATCTGCAT 1808 >seq1424 Length=24560 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || ||||||||| ||| || || | || |||||||||||||| || || || Sbjct 23807 TTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATC 23748 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 | ||||||||||||| || | | ||| || ||| |||||| |||| | | Sbjct 23747 AATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTCG 23688 Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 | || ||||| ||||| || || | ||||| | || ||||| || || || || ||| Sbjct 23687 ATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 23628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429522335273372