Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1424 87.8 1e-12 >seq1424 Length=24560 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| || || |||||||| || || || |||| ||||| | Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | |||| | || || || ||| | || || || || ||||| || Sbjct 23689 GACAATGTCAAGAGTAAAA-TCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATT 23747 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || ||||||||||| || || || | || || | ||||||| ||||| ||||| Sbjct 23748 GATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAA 23807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337991292977552