Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq819 159 8e-34
seq1424 98.7 2e-15
seq1691 91.5 4e-13
>seq819
Length=4427
Score = 159 bits (176), Expect = 8e-34
Identities = 171/224 (76%), Gaps = 4/224 (2%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||||||||| || |||||||||||||||| |||||| |||| | |||
Sbjct 2029 ACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGT 1970
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || || || ||||| || || ||||||||||||||||| ||||| || || |||||
Sbjct 1969 TCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACC 1910
Query 225612 TTCCTTGTCTTGGATCTTTTGC--TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669
|| || ||||||| |||||| || || |||||||| |||||| |||| || ||
Sbjct 1909 CTCTTTATCTTGGA--TTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCA 1852
Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| || || || ||||| || | || |||| ||| | |||||
Sbjct 1851 AGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 158 bits (174), Expect = 3e-33
Identities = 153/197 (78%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| ||||| || ||||||||||||| || ||||| | ||| || | ||||||
Sbjct 1791 AGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCT 1732
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || ||||| || || || || || ||||| || ||
Sbjct 1731 TCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCC 1672
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || |||||| |||||||| ||||| | |||||| || || ||||| |||
Sbjct 1671 TGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTC 1612
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| || | |||||
Sbjct 1611 TTGCCAGTGAGGGTTTT 1595
Score = 122 bits (134), Expect = 2e-22
Identities = 159/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||||||||| || || || | ||||| || | | |||| ||
Sbjct 2251 TCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACC 2192
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||||||| || ||||| ||||||||||| || || || || || || ||||||||
Sbjct 2191 ATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTT 2132
Query 225618 GTCTTGGATCTTTTGC--TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|||||||| |||||| || || || || ||||| ||| | || || || | |||
Sbjct 2131 GTCTTGGA--TTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTG 2074
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| |||| |||||| | ||| | |||||
Sbjct 2073 ATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 118 bits (130), Expect = 3e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| || || || || |||| ||||||||||| || || | || ||
Sbjct 1457 AGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGACAGGGTACGACCGTCC 1398
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||||||||| || |||||||| || || ||||| |||||||||
Sbjct 1397 TCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGGATACCCTCCTTGTCT 1338
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||| || || ||||| || || | || ||||| | ||||| |||
Sbjct 1337 TGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACGTCGAGTGTGATGGTC 1278
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 1277 TTCCCGGT 1270
>seq1424
Length=24560
Score = 98.7 bits (108), Expect = 2e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| || |||||| | || | ||||| || ||||| || || ||||||||
Sbjct 23807 TTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATC 23748
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || |||||||| || ||||| ||||| || ||||| || ||| ||| |||
Sbjct 23747 AATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTCG 23688
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|||||||| || || || || | ||||| |||||||||||
Sbjct 23687 ATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 23644
>seq1691
Length=23441
Score = 91.5 bits (100), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || ||||| || || ||||| ||||||| ||||| || | | ||
Sbjct 8979 ACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGT 9038
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || ||||| || ||||||||||| | ||||| |||||||| ||||| ||
Sbjct 9039 ACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGGAATGCC 9098
Query 225612 TTCCTTGTCT 225621
|||||||||
Sbjct 9099 CTCCTTGTCT 9108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192463298764136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |