Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq134 271 1e-67
seq302 116 5e-21
>seq134
Length=7744
Score = 271 bits (300), Expect = 1e-67
Identities = 435/624 (70%), Gaps = 2/624 (0%)
Strand=Plus/Minus
Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
||| | |||| ||||| || | || | ||||| |||| || || |||||| |||
Sbjct 5171 GTAAAGAGCC--TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGG 5114
Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032
|| | | | ||| || |||| || || ||| || |||||||||||||||||| ||||
Sbjct 5113 CAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAA 5054
Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092
||||| | || ||||| || | | | |||||| ||||| ||||| || ||
Sbjct 5053 AGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCC 4994
Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152
| || || | |||||||| ||||| ||||| ||||| || || | | |||| || |||
Sbjct 4993 AAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGT 4934
Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212
|||||||||||||| || | |||||| || ||||| || |||| | || ||||||||
Sbjct 4933 TTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACG 4874
Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272
|| ||||| || | |||||||||||| | ||| ||| || | | ||||| |
Sbjct 4873 ATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGA 4814
Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332
||| | || || || || || |||| || || | || ||| ||||| || |||
Sbjct 4813 ATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCG 4754
Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392
|| |||||||| |||||||| ||| |||||| | ||| || || || ||| ||| |
Sbjct 4753 TAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGT 4694
Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452
|| || || ||||| || | || ||||| |||||||| || |||||| ||| |
Sbjct 4693 TGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATG 4634
Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512
|| || || ||||| || | |||| || | ||||||||| || || ||||||
Sbjct 4633 AGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGC 4574
Query 78513 ATCAACATATGCTGAGGTCTTTCA 78536
|| | ||| || ||||| | ||||
Sbjct 4573 ATGATCATGTGTTGAGGGCGTTCA 4550
Score = 158 bits (174), Expect = 2e-33
Identities = 699/1096 (64%), Gaps = 27/1096 (2%)
Strand=Plus/Minus
Query 76776 TCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTT 76835
|||| |||||||||||||||| ||||| | ||||||| ||||||||||| || |||
Sbjct 6389 TCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGTT 6330
Query 76836 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCG 76895
|| ||||| || |||| || |||||||||||| || | |||| | | | |||
Sbjct 6329 TTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTG-----CCCATGGTCG 6275
Query 76896 GCT-----ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950
||| | ||| ||||| | ||||| ||| ||||| || || |||| |||||| |
Sbjct 6274 GCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAG 6215
Query 76951 CCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010
|||| | | || || |||| |||||||| | || || | | ||||||||
Sbjct 6214 CCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATAT 6155
Query 77011 CATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067
| | ||| | ||| | | || ||||| || || || || | ||||| || || |
Sbjct 6154 CCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCA 6095
Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127
| | || ||||| | | || | | | ||||| ||||| || ||||
Sbjct 6094 TGTTGTCGGACCACAGACCCATGTCCACGAGGTCCTTCAGGAGCCACGGATTGACGATTT 6035
Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187
| ||||| || | || || | ||| | ||| || ||| ||| ||||| || | |||
Sbjct 6034 GGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCATT 5975
Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247
| ||| || | ||| || || ||||| ||||| || || || | |||||||
Sbjct 5974 CGTTGAACCCAAGAATCTGGCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACTAT 5915
Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307
| | | ||||| | || | | ||| || | | ||||||||| || || | |
Sbjct 5914 TACGCACTCCATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCGGTGG 5855
Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367
| || | ||| | ||| ||||| || || || | | | || || | ||| |
Sbjct 5854 GGGTCACTTTCCACATATCATATTGAAGGATACCCTGAGAGACGGGGGAGCCTTCATACG 5795
Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC-CGTAATAA 77426
| ||| || || || ||| ||| || ||||| ||| ||| ||| ||| |||
Sbjct 5794 TGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGGACGCAGTCAA-ACTCGCGTGGTAA 5736
Query 77427 ATTGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATG 77485
|||||||||||||| | | || ||| ||| || ||| |||||| ||| |
Sbjct 5735 ATTGTTTCGAAAATTTGAATGTTTAAGAGCTT-AGCCTCAGGTGAATCAAATGGAAGCCG 5677
Query 77486 TAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 77545
| | || |||||||| || | ||||| || || | |||| || | ||| |
Sbjct 5676 CAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGACGGAA 5617
Query 77546 ATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605
||| | | ||||| | ||||| || || || || || || || || ||
Sbjct 5616 GTTGCTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAAGGTT 5557
Query 77606 TCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC-TATA- 77663
| ||| || |||| | || || | || || |||||| | || || || || |
Sbjct 5556 ACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATA-CTCCCCTCGTACAG 5498
Query 77664 -----ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCG 77717
|| || | |||||| ||||| || | || || ||||| ||||||| | |||
Sbjct 5497 GATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTGGCG 5438
Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777
| ||| | || |||||||| || || ||| | | | || ||||| || || |
Sbjct 5437 -AGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCTTC 5379
Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837
||||||||||| | ||||| | |||||| ||||| ||||| || | || || ||| |
Sbjct 5378 TGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTT 5319
Query 77838 TGTGATTCGATAATAG 77853
|| | ||| | |||||
Sbjct 5318 TGAGCTTCAAGAATAG 5303
>seq302
Length=30871
Score = 116 bits (128), Expect = 5e-21
Identities = 326/500 (65%), Gaps = 3/500 (1%)
Strand=Plus/Plus
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
|| || || ||||| |||||||| ||||| || || ||||| ||| ||| || || ||
Sbjct 11193 TTCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTA 11252
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969
||||| || |||||||| || | || || | ||| || || || | |
Sbjct 11253 TCCATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGG 11312
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029
|| | ||| || ||||| || || ||| ||| | | |||||||| | |||
Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGC 11372
Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089
||||| || || || | || ||||| || |||||||||||||| || || |||
Sbjct 11373 GCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432
Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149
|| | || | || || | | ||| || ||| | | ||| ||||||
Sbjct 11433 CTCTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGACAGGCAAAA 11492
Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209
||| || | || || || | | ||| | ||||||||||| || ||||| |||||
Sbjct 11493 TCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCATA 11552
Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269
|| || ||||| || ||||| || |||| ||||| ||||| ||||| ||||||||
Sbjct 11553 AGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTCA 11612
Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGT 48326
|| || || || ||| ||| | || | | | | || |||| | ||||| ||
Sbjct 11613 ACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGGTAGACTCCTTGTCTTCAATCCATCGG 11672
Query 48327 TGTGCCCAATCAGCCTTCTT 48346
||||||||||| |||||
Sbjct 11673 ATGGCCCAATCAGCTTTCTT 11692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694630211148160
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