Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq134 271 1e-67 seq302 116 5e-21 >seq134 Length=7744 Score = 271 bits (300), Expect = 1e-67 Identities = 435/624 (70%), Gaps = 2/624 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||| | |||| ||||| || | || | ||||| |||| || || |||||| ||| Sbjct 5171 GTAAAGAGCC--TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGG 5114 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 || | | | ||| || |||| || || ||| || |||||||||||||||||| |||| Sbjct 5113 CAAAAGAGAGTCCATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAA 5054 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 ||||| | || ||||| || | | | |||||| ||||| ||||| || || Sbjct 5053 AGAGCTAGGAAAAGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCC 4994 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 | || || | |||||||| ||||| ||||| ||||| || || | | |||| || ||| Sbjct 4993 AAGAATTCGAAAATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGT 4934 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 |||||||||||||| || | |||||| || ||||| || |||| | || |||||||| Sbjct 4933 TTATTACCTCCCTGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACG 4874 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || ||||| || | |||||||||||| | ||| ||| || | | ||||| | Sbjct 4873 ATTCCGTTTGAGGATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGA 4814 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 ||| | || || || || || |||| || || | || ||| ||||| || ||| Sbjct 4813 ATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCG 4754 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 || |||||||| |||||||| ||| |||||| | ||| || || || ||| ||| | Sbjct 4753 TAAATACCCTCAATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGT 4694 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 || || || ||||| || | || ||||| |||||||| || |||||| ||| | Sbjct 4693 TGCGGGGTACCGGCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATG 4634 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 || || || ||||| || | |||| || | ||||||||| || || |||||| Sbjct 4633 AGGTTATAGGTTTCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGC 4574 Query 78513 ATCAACATATGCTGAGGTCTTTCA 78536 || | ||| || ||||| | |||| Sbjct 4573 ATGATCATGTGTTGAGGGCGTTCA 4550 Score = 158 bits (174), Expect = 2e-33 Identities = 699/1096 (64%), Gaps = 27/1096 (2%) Strand=Plus/Minus Query 76776 TCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTT 76835 |||| |||||||||||||||| ||||| | ||||||| ||||||||||| || ||| Sbjct 6389 TCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGTT 6330 Query 76836 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCG 76895 || ||||| || |||| || |||||||||||| || | |||| | | | ||| Sbjct 6329 TTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTG-----CCCATGGTCG 6275 Query 76896 GCT-----ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCG 76950 ||| | ||| ||||| | ||||| ||| ||||| || || |||| |||||| | Sbjct 6274 GCTCCTTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAG 6215 Query 76951 CCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 |||| | | || || |||| |||||||| | || || | | |||||||| Sbjct 6214 CCATCTGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATAT 6155 Query 77011 CATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 | | ||| | ||| | | || ||||| || || || || | ||||| || || | Sbjct 6154 CCTGTGGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCA 6095 Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 | | || ||||| | | || | | | ||||| ||||| || |||| Sbjct 6094 TGTTGTCGGACCACAGACCCATGTCCACGAGGTCCTTCAGGAGCCACGGATTGACGATTT 6035 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 | ||||| || | || || | ||| | ||| || ||| ||| ||||| || | ||| Sbjct 6034 GGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCATT 5975 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 | ||| || | ||| || || ||||| ||||| || || || | ||||||| Sbjct 5974 CGTTGAACCCAAGAATCTGGCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACTAT 5915 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 | | | ||||| | || | | ||| || | | ||||||||| || || | | Sbjct 5914 TACGCACTCCATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCGGTGG 5855 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 | || | ||| | ||| ||||| || || || | | | || || | ||| | Sbjct 5854 GGGTCACTTTCCACATATCATATTGAAGGATACCCTGAGAGACGGGGGAGCCTTCATACG 5795 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC-CGTAATAA 77426 | ||| || || || ||| ||| || ||||| ||| ||| ||| ||| ||| Sbjct 5794 TGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGGACGCAGTCAA-ACTCGCGTGGTAA 5736 Query 77427 ATTGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATG 77485 |||||||||||||| | | || ||| ||| || ||| |||||| ||| | Sbjct 5735 ATTGTTTCGAAAATTTGAATGTTTAAGAGCTT-AGCCTCAGGTGAATCAAATGGAAGCCG 5677 Query 77486 TAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 77545 | | || |||||||| || | ||||| || || | |||| || | ||| | Sbjct 5676 CAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGACGGAA 5617 Query 77546 ATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||| | | ||||| | ||||| || || || || || || || || || Sbjct 5616 GTTGCTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAAGGTT 5557 Query 77606 TCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC-TATA- 77663 | ||| || |||| | || || | || || |||||| | || || || || | Sbjct 5556 ACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATA-CTCCCCTCGTACAG 5498 Query 77664 -----ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCG 77717 || || | |||||| ||||| || | || || ||||| ||||||| | ||| Sbjct 5497 GATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTGGCG 5438 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 | ||| | || |||||||| || || ||| | | | || ||||| || || | Sbjct 5437 -AGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCTTC 5379 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 ||||||||||| | ||||| | |||||| ||||| ||||| || | || || ||| | Sbjct 5378 TGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTT 5319 Query 77838 TGTGATTCGATAATAG 77853 || | ||| | ||||| Sbjct 5318 TGAGCTTCAAGAATAG 5303 >seq302 Length=30871 Score = 116 bits (128), Expect = 5e-21 Identities = 326/500 (65%), Gaps = 3/500 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || || ||||| |||||||| ||||| || || ||||| ||| ||| || || || Sbjct 11193 TTCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTA 11252 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| || |||||||| || | || || | ||| || || || | | Sbjct 11253 TCCATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGG 11312 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | ||| || ||||| || || ||| ||| | | |||||||| | ||| Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGAAGC 11372 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 ||||| || || || | || ||||| || |||||||||||||| || || ||| Sbjct 11373 GCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGATGATC 11432 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 || | || | || || | | ||| || ||| | | ||| |||||| Sbjct 11433 CTCTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGACAGGCAAAA 11492 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 ||| || | || || || | | ||| | ||||||||||| || ||||| ||||| Sbjct 11493 TCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGGCATA 11552 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 || || ||||| || ||||| || |||| ||||| ||||| ||||| |||||||| Sbjct 11553 AGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCCTTCA 11612 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGT 48326 || || || || ||| ||| | || | | | | || |||| | ||||| || Sbjct 11613 ACAGCAGCGAAGGCGACAAGACGCTGCGCAAAGGTAGACTCCTTGTCTTCAATCCATCGG 11672 Query 48327 TGTGCCCAATCAGCCTTCTT 48346 ||||||||||| ||||| Sbjct 11673 ATGGCCCAATCAGCTTTCTT 11692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694630211148160