Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq134 277 3e-69 seq302 127 3e-24 >seq134 Length=7744 Score = 277 bits (306), Expect = 3e-69 Identities = 428/611 (70%), Gaps = 0/611 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || | || | ||||| |||| || || |||||| || || | | | | Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || |||| || || ||| || |||||||||||||||||| |||| ||||| | || Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| || | | | |||||| ||||| ||||| || || | ||| || | | Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||||| ||||| ||||| ||||| || || | | | ||||| ||||||||||||||| Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | |||||| |||||||| || |||| | || |||||||| || ||||| || Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | ||||||||||| | ||| ||| || ||||||| ||| || || Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || || || || | || || || | ||||| ||||| ||||| || || ||||| Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 ||||| || ||| |||||| | ||| || || || ||| ||| | || || || Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||||| || | |||||||| ||||| ||||| |||||| ||| | || || || ||| Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 || || || |||| ||| | ||||||||| ||||| |||||||| | ||| || Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562 Query 77120 TGAGGTCGTTC 77130 ||||| ||||| Sbjct 4561 TGAGGGCGTTC 4551 Score = 116 bits (128), Expect = 5e-21 Identities = 690/1096 (63%), Gaps = 27/1096 (2%) Strand=Plus/Minus Query 75371 TCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTT 75430 |||| || |||||||| |||| ||||| | ||||||| ||||||||||| || ||| Sbjct 6389 TCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGTT 6330 Query 75431 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCG 75490 || ||||| || |||| || |||||||||||| || | |||| |||| || Sbjct 6329 TTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTCC 6270 Query 75491 GCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATT 75550 | ||| ||||| | ||||| ||| ||||| || || |||| |||||| ||||| Sbjct 6269 TTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCATC 6210 Query 75551 TTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCT 75610 | | || || |||| |||||||| | || || | | ||||||||| | | Sbjct 6209 TGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTGT 6150 Query 75611 GGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCA 75667 || | || | | || ||||| || || || || | ||||| || || || | Sbjct 6149 GGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCATGTTG 6090 Query 75668 TCATTCCACA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTT 75722 || ||||| || | | | ||| | | ||||| ||||| || |||| Sbjct 6089 TCGGACCACAGACCCATGTCCACGAGGT-----CCTTCAGGAGCCACGGATTGACGATTT 6035 Query 75723 GAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 75782 | ||||| || | || || | || | ||| || ||| ||| ||||| || | ||| Sbjct 6034 GGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCATT 5975 Query 75783 CATTGTTTCCCAAAATTTGAGCAGTTG-AAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 | ||| || | ||| || || | || ||||||||||| || || || | |||||| Sbjct 5974 CGTTGAACCCAAGAATCTG-GCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACTA 5916 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | | ||||| | || | | ||| || | | ||||||||| || || | Sbjct 5915 TTACGCACTCCATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCGGTG 5856 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTATA 75960 || || | ||| | ||| ||||| || || || || || | || || | ||| Sbjct 5855 GGGGTCACTTTCCACATATCATATTGAAGGATACC-CTGAGAGACGGGGGAGCCTTCATA 5797 Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGC-CTCTAACGCACCGTAAT 76019 || || | ||||| ||| ||| || || || ||| || ||| | ||| | Sbjct 5796 CGTGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGGACGCAGTCAAACTC-GCGTGGT 5738 Query 76020 AAATTGTTTCGAAAATCT-TCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 |||||||||||||||| | | |||||| ||| || ||| | |||||| ||| Sbjct 5737 AAATTGTTTCGAAAATTTGAATGTTTAAGAGCTT-AGCCTCAGGTGAATCAAATGGAAGC 5679 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | || || ||||| || || ||||| || || | |||| || | ||| | Sbjct 5678 CGCAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGACGG 5619 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 ||| | ||||| | || || || || ||| || || || || || Sbjct 5618 AAGTTGCTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAAGG 5559 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA-- 76256 || | || || |||| | || || | || ||| |||||| | | || || Sbjct 5558 TTACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATACTCCCCTCGTACA 5499 Query 76257 ----TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 ||| || || | ||| ||||| || | || || || || ||||||| | Sbjct 5498 GGATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTGGC 5439 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 | ||| | || ||||| ||||| || ||| | | || || || || || | Sbjct 5438 GAGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCTTC 5379 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| | ||| || | |||||| ||||| | ||| || | ||||| ||| | Sbjct 5378 TGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTT 5319 Query 76433 TGTGATTCGATAATAG 76448 || | ||| | ||||| Sbjct 5318 TGAGCTTCAAGAATAG 5303 >seq302 Length=30871 Score = 127 bits (140), Expect = 3e-24 Identities = 297/444 (67%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| ||||| |||||||| ||||| || || ||||| ||| ||| || || || Sbjct 11193 TTCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTA 11252 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || ||||| || || || || || | ||| || || || | | Sbjct 11253 TCCATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGG 11312 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT----TTCACAATTCATTCCTAT 46514 || | ||| || ||||| || || || || || ||| || | |||||||| | Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTA--TTGGCA-CATGAGCTTGGCG-TTCATTCCGAG 11368 Query 46515 GAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATAT 46574 || ||| || || || || | || ||||| || || ||||||||||| || | || Sbjct 11369 AAGCGCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGAT 11428 Query 46575 TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634 ||| || | || | || || | || ||| || ||| | | ||| || Sbjct 11429 GATCCTCTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGACAGGC 11488 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||||||| || | ||| || || | | ||| | ||||||||||| || || ||||| Sbjct 11489 AAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGG 11548 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || || || || || ||||| || || | ||||| ||||| ||||| ||||| Sbjct 11549 CATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCC 11608 Query 46755 TTCTACAGCCGCGAATGCGACAAG 46778 ||| ||||| ||||| |||||||| Sbjct 11609 TTCAACAGCAGCGAAGGCGACAAG 11632 Score = 100 bits (110), Expect = 4e-16 Identities = 179/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 ||||| |||||||| || || ||||| || ||||| || || | || || | || | Sbjct 11839 TCTGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGAACC 11898 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || ||||| | || || ||| || || || || || || ||||| || || Sbjct 11899 TGAACCTCCCCGCTGAAACGCTCAACCAGGTTTTCGTTGACAATGCCATCCGACGCGGCG 11958 Query 47047 AAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATCGGT-AGTCAGTTTATTCCA 47102 || |||||||| || ||| || || || | |||||| | | || ||| ||||| Sbjct 11959 AAGAATGCCAACACGTGTGAGATGAAGTACCGCTCATCATCGTTCAATCTGTTG-TTCCA 12017 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || | | ||||||||| | || | |||||| || |||||||| |||||||||||||| Sbjct 12018 ATCGTGAAGATCTTTTGAGAGGTCAATTTCTTCTGCAGTCCAGAACGACGCCTCTGCTTT 12077 Query 47163 TTTATACATATTCCATAT 47180 |||||||| | ||| || Sbjct 12078 CTTATACATTTGCCAGAT 12095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712894796494080