Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq134 277 3e-69
seq302 127 3e-24
>seq134
Length=7744
Score = 277 bits (306), Expect = 3e-69
Identities = 428/611 (70%), Gaps = 0/611 (0%)
Strand=Plus/Minus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
||||| || | || | ||||| |||| || || |||||| || || | | | |
Sbjct 5161 TCAAACTCGGCACCATAGACATCCGCCAAGCCTGGCGCTTCATTGGGGCAAAAGAGAGTC 5102
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| || |||| || || ||| || |||||||||||||||||| |||| ||||| | ||
Sbjct 5101 CATTCGCCATTTTTCTCAACACGCTTCATAAAGAGATCAGGTGTCCAAAGAGCTAGGAAA 5042
Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699
||||| || | | | |||||| ||||| ||||| || || | ||| || | |
Sbjct 5041 AGATCACGAGCCCGAACTTCTTCCTTTCCGTGGTTCTTACGGAGGTCCAAGAATTCGAAA 4982
Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759
||||||| ||||| ||||| ||||| || || | | | ||||| |||||||||||||||
Sbjct 4981 ATATCAGTGTGCCACGGTTCGAGATAAATAGCGAAAGCTCCCGGCCGTTTATTACCTCCC 4922
Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819
|| || | |||||| |||||||| || |||| | || |||||||| || ||||| ||
Sbjct 4921 TGGTCGACATATCTAGCAGTGTTGTTGAAAACGCGCAGCATTGGAACGATTCCGTTTGAG 4862
Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879
| ||||||||||| | ||| ||| || ||||||| ||| || ||
Sbjct 4861 GATCCATTTGTTCCGGCAATGTAAGAGCCGGTGCCACGAATGCGGTGAATGTTGAGACCA 4802
Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939
|| || || || | || || || | ||||| ||||| ||||| || || |||||
Sbjct 4801 ATACCACCAGCAGTCTTTGAAATCAAGGCACAAGTCTTCAACGTGTCGTAAATACCCTCA 4742
Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999
||||| || ||| |||||| | ||| || || || ||| ||| | || || ||
Sbjct 4741 ATACTGTCCTCCTTCATGTCGATAAGGAAGCACGAAGCCATCTGAGGTTGCGGGGTACCG 4682
Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059
||||| || | |||||||| ||||| ||||| |||||| ||| | || || || |||
Sbjct 4681 GCATTGAAAAGGGTAGGAGAAGCATGCGTGAAGAATTTTTGAGACATGAGGTTATAGGTT 4622
Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119
|| || || |||| ||| | ||||||||| ||||| |||||||| | ||| ||
Sbjct 4621 TCGATGACCTTCTCTACATCATCTCCATGAATTCCGACAGCAACACGCATGATCATGTGT 4562
Query 77120 TGAGGTCGTTC 77130
||||| |||||
Sbjct 4561 TGAGGGCGTTC 4551
Score = 116 bits (128), Expect = 5e-21
Identities = 690/1096 (63%), Gaps = 27/1096 (2%)
Strand=Plus/Minus
Query 75371 TCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTT 75430
|||| || |||||||| |||| ||||| | ||||||| ||||||||||| || |||
Sbjct 6389 TCCACGGTAAACTGAATTGGAGCTGATGCAGCCATTGTACGGAGATAGTACATTCCGGTT 6330
Query 75431 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCG 75490
|| ||||| || |||| || |||||||||||| || | |||| |||| ||
Sbjct 6329 TTCAGACCAAGTTTCCAACCCGTGAAATGCATGCTGGTAATTTTGCCCATGGTCGGCTCC 6270
Query 75491 GCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATT 75550
| ||| ||||| | ||||| ||| ||||| || || |||| |||||| |||||
Sbjct 6269 TTCAAATGGATATTGAGAGACTGGGATTGGTCGATAAATGCACCTCGATCAGCAGCCATC 6210
Query 75551 TTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCT 75610
| | || || |||| |||||||| | || || | | ||||||||| | |
Sbjct 6209 TGAACTATAGTTCGCTGAGATATTTCCCAGACGGTCTTATATAGAGCTTTGATATCCTGT 6150
Query 75611 GGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCA 75667
|| | || | | || ||||| || || || || | ||||| || || || |
Sbjct 6149 GGGATGTTGGGAATGTTCTGAATAGAGCCTCCGTCCGCAATAATACGGTTTTTCATGTTG 6090
Query 75668 TCATTCCACA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTT 75722
|| ||||| || | | | ||| | | ||||| ||||| || ||||
Sbjct 6089 TCGGACCACAGACCCATGTCCACGAGGT-----CCTTCAGGAGCCACGGATTGACGATTT 6035
Query 75723 GAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 75782
| ||||| || | || || | || | ||| || ||| ||| ||||| || | |||
Sbjct 6034 GGAATTCACCCGCCAGAACACGACGTGAGTAGATGTTAGAGGTGTATGGCTCAAAGCATT 5975
Query 75783 CATTGTTTCCCAAAATTTGAGCAGTTG-AAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
| ||| || | ||| || || | || ||||||||||| || || || | ||||||
Sbjct 5974 CGTTGAACCCAAGAATCTG-GCTGGTGCTGGCAGTCGGCATGGGCGCAACAAGCAAACTA 5916
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
|| | | ||||| | || | | ||| || | | ||||||||| || || |
Sbjct 5915 TTACGCACTCCATGCTTAGCAATATCTTGTTTCAGCGAGTCCCAATCCCAGAGGTCGGTG 5856
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTATA 75960
|| || | ||| | ||| ||||| || || || || || | || || | |||
Sbjct 5855 GGGGTCACTTTCCACATATCATATTGAAGGATACC-CTGAGAGACGGGGGAGCCTTCATA 5797
Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGC-CTCTAACGCACCGTAAT 76019
|| || | ||||| ||| ||| || || || ||| || ||| | ||| |
Sbjct 5796 CGTGGAATATGGGCCGTCAATTTTAGCCAGCTCACAGGACGCAGTCAAACTC-GCGTGGT 5738
Query 76020 AAATTGTTTCGAAAATCT-TCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078
|||||||||||||||| | | |||||| ||| || ||| | |||||| |||
Sbjct 5737 AAATTGTTTCGAAAATTTGAATGTTTAAGAGCTT-AGCCTCAGGTGAATCAAATGGAAGC 5679
Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138
| | | || || ||||| || || ||||| || || | |||| || | ||| |
Sbjct 5678 CGCAGAGCAAGGAAGGCATCAGCAAGGCCCTGGACACCGCAAGCAATGGGGCGATGACGG 5619
Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198
||| | ||||| | || || || || ||| || || || || ||
Sbjct 5618 AAGTTGCTTCGTCTTGCTTCCTCGACCGGATAGTAGTTCCGATCGATGATCTTGTTAAGG 5559
Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA-- 76256
|| | || || |||| | || || | || ||| |||||| | | || ||
Sbjct 5558 TTACGAACGACAACTTGAGTTACTTCATGGAGCTTGCCGAAATCATACTCCCCTCGTACA 5499
Query 76257 ----TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312
||| || || | ||| ||||| || | || || || || ||||||| |
Sbjct 5498 GGATCCACGAAGGTAGGCAAAGCAATAGACGCCAAGTTGCACACTGCAACCTCATCTGGC 5439
Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372
| ||| | || ||||| ||||| || ||| | | || || || || || |
Sbjct 5438 GAGCAATACTCAATGATCTCGGTGCACAGGTTAGAGCTTCTAATTGTGCCTAGGTTCTTC 5379
Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432
||||||||||| | ||| || | |||||| ||||| | ||| || | ||||| ||| |
Sbjct 5378 TGGTTGCTCTTCTCGTTGCAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTT 5319
Query 76433 TGTGATTCGATAATAG 76448
|| | ||| | |||||
Sbjct 5318 TGAGCTTCAAGAATAG 5303
>seq302
Length=30871
Score = 127 bits (140), Expect = 3e-24
Identities = 297/444 (67%), Gaps = 8/444 (2%)
Strand=Plus/Plus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
|| ||||| ||||| |||||||| ||||| || || ||||| ||| ||| || || ||
Sbjct 11193 TTCTGGTAGTCACCAACACGTTTTTCGAAGAAGTTGGTTTTACCTGCCAGGGAGATGTTA 11252
Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458
||||| || ||||| || || || || || | ||| || || || | |
Sbjct 11253 TCCATGAAGTCAAATGGGTTGGTGGAGTTGTAGACTTTCTTGTTGCCCAAAGCAACGAGG 11312
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT----TTCACAATTCATTCCTAT 46514
|| | ||| || ||||| || || || || || ||| || | |||||||| |
Sbjct 11313 AGGCGATCAGCGACGAACTCAATGTA--TTGGCA-CATGAGCTTGGCG-TTCATTCCGAG 11368
Query 46515 GAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATAT 46574
|| ||| || || || || | || ||||| || || ||||||||||| || | ||
Sbjct 11369 AAGCGCGACTGGGAGCGCATCTGAGAGGAACTCCTGCTCGATAGTGACAGCTTCAGTGAT 11428
Query 46575 TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634
||| || | || | || || | || ||| || ||| | | ||| ||
Sbjct 11429 GATCCTCTCGACAGCCTCTTGGCTAGGACGGTGACGCAAGTGAGAAAAGAGGAGACAGGC 11488
Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694
||||||| || | ||| || || | | ||| | ||||||||||| || || |||||
Sbjct 11489 AAAATCAGTGTGTAAGCCCTCGTCACGAGAAATAAGCTCGTTAGAAAACGTAAGACCAGG 11548
Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754
||| || || || || || ||||| || || | ||||| ||||| ||||| |||||
Sbjct 11549 CATAAGACCGCGTTTCTTCAGCCAGAAGATTGAAGCGAAGGATCCGCTGAAGAAGATGCC 11608
Query 46755 TTCTACAGCCGCGAATGCGACAAG 46778
||| ||||| ||||| ||||||||
Sbjct 11609 TTCAACAGCAGCGAAGGCGACAAG 11632
Score = 100 bits (110), Expect = 4e-16
Identities = 179/258 (69%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986
||||| |||||||| || || ||||| || ||||| || || | || || | || |
Sbjct 11839 TCTGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGAACC 11898
Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046
|| ||||| | || || ||| || || || || || || ||||| || ||
Sbjct 11899 TGAACCTCCCCGCTGAAACGCTCAACCAGGTTTTCGTTGACAATGCCATCCGACGCGGCG 11958
Query 47047 AAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATCGGT-AGTCAGTTTATTCCA 47102
|| |||||||| || ||| || || || | |||||| | | || ||| |||||
Sbjct 11959 AAGAATGCCAACACGTGTGAGATGAAGTACCGCTCATCATCGTTCAATCTGTTG-TTCCA 12017
Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162
|| | | ||||||||| | || | |||||| || |||||||| ||||||||||||||
Sbjct 12018 ATCGTGAAGATCTTTTGAGAGGTCAATTTCTTCTGCAGTCCAGAACGACGCCTCTGCTTT 12077
Query 47163 TTTATACATATTCCATAT 47180
|||||||| | ||| ||
Sbjct 12078 CTTATACATTTGCCAGAT 12095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712894796494080
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