Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq819 158 3e-33
seq1424 105 2e-17
seq134 104 5e-17
>seq819
Length=4427
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| ||||| || || ||||||||||| ||||| |||| | ||||| || ||
Sbjct 2019 AGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCC 1960
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || ||||||||||| | |||||||| | | ||| || || || |||
Sbjct 1959 TCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCT 1900
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| ||| || | || | | | ||||| || || ||||||||||||||||||
Sbjct 1899 TGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTT 1840
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||| ||||||| ||||||
Sbjct 1839 TTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| ||||| ||| || || |||||||| || | | |||| |||||||||||
Sbjct 2239 ATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTG 2180
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || || |||||||| | |||||| || | | ||| |||||||| ||||| |||||
Sbjct 2179 TTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATTTT 2120
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||| || | || | |||| || ||||| || || || || || |||||||| ||
Sbjct 2119 GCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTTTTGCCAGT 2060
Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104
||||| |||||||||| ||||||
Sbjct 2059 CAGAGTTTTCACGAAGATCTGCAT 2036
Score = 102 bits (112), Expect = 2e-16
Identities = 145/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || || |||||||||||||| ||||| | || || | ||||||
Sbjct 1791 AGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCT 1732
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || |||||||| || | ||||| |||| | ||| ||||| || |
Sbjct 1731 TCGAGCTGCTTT--CCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTAT 1674
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || ||||| || || | || | | | |||||| || || || | || || |
Sbjct 1673 CCTGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGG 1614
Query 152071 TTTTGCCCGTGAGAGTCTTCAC 152092
| ||||| ||||| || |||||
Sbjct 1613 TCTTGCCAGTGAGGGTTTTCAC 1592
>seq1424
Length=24560
Score = 105 bits (116), Expect = 2e-17
Identities = 136/183 (74%), Gaps = 6/183 (3%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGAT 151975
||||||||||| |||||| |||| || | ||||| || || ||| |||||||||||
Sbjct 23807 TTTTGGATGTTATAATCG-CTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGAT 23749
Query 151976 AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTC 152035
| | ||||||||| | | ||| || ||||| || || ||||| |||||| | ||
Sbjct 23748 CAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTC 23689
Query 152036 TACGCTGTC--TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093
| | |||| || |||| || |||||||| || || ||||||||||| ||||| |||
Sbjct 23688 GATGGTGTCGCTGGACTCG--ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACG 23631
Query 152094 AAG 152096
|||
Sbjct 23630 AAG 23628
>seq134
Length=7744
Score = 104 bits (114), Expect = 5e-17
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698
|||||||| ||||||| ||||||||||| || || ||| || |||| |||||||
Sbjct 5053 TTTGGACACCTGATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTT 5112
Query 115699 GTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTACG 115758
| ||||||||||| || || | | ||||| |||||| | ||||||||| ||||||||
Sbjct 5113 GCCCCAATGAAGCGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACG 5172
Query 115759 AAAGGTA 115765
||| |||
Sbjct 5173 AAAAGTA 5179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153755102885924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |