Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq819 158 3e-33 seq1424 105 2e-17 seq134 104 5e-17 >seq819 Length=4427 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| || || ||||||||||| ||||| |||| | ||||| || || Sbjct 2019 AGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGAGAGAGTTCGGCCGTCC 1960 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||||||||| | |||||||| | | ||| || || || ||| Sbjct 1959 TCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTATCT 1900 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| || | || | | | ||||| || || |||||||||||||||||| Sbjct 1899 TGGATTTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGACTTCAAGAGTAATAGTT 1840 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| |||||| Sbjct 1839 TTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| ||| || || |||||||| || | | |||| ||||||||||| Sbjct 2239 ATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCTTCTAGCTG 2180 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || |||||||| | |||||| || | | ||| |||||||| ||||| ||||| Sbjct 2179 TTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATTTT 2120 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | |||| || ||||| || || || || || |||||||| || Sbjct 2119 GCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGACCTCCAGTGTGATGGTTTTGCCAGT 2060 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||||| |||||| Sbjct 2059 CAGAGTTTTCACGAAGATCTGCAT 2036 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || |||||||||||||| ||||| | || || | |||||| Sbjct 1791 AGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGCCATCT 1732 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | ||||| |||| | ||| ||||| || | Sbjct 1731 TCGAGCTGCTTT--CCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTAT 1674 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| || || | || | | | |||||| || || || | || || | Sbjct 1673 CCTGGATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGG 1614 Query 152071 TTTTGCCCGTGAGAGTCTTCAC 152092 | ||||| ||||| || ||||| Sbjct 1613 TCTTGCCAGTGAGGGTTTTCAC 1592 >seq1424 Length=24560 Score = 105 bits (116), Expect = 2e-17 Identities = 136/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGAT 151975 ||||||||||| |||||| |||| || | ||||| || || ||| ||||||||||| Sbjct 23807 TTTTGGATGTTATAATCG-CTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGAT 23749 Query 151976 AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTC 152035 | | ||||||||| | | ||| || ||||| || || ||||| |||||| | || Sbjct 23748 CAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGTC 23689 Query 152036 TACGCTGTC--TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 | | |||| || |||| || |||||||| || || ||||||||||| ||||| ||| Sbjct 23688 GATGGTGTCGCTGGACTCG--ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACG 23631 Query 152094 AAG 152096 ||| Sbjct 23630 AAG 23628 >seq134 Length=7744 Score = 104 bits (114), Expect = 5e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 115639 TTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTCTTTT 115698 |||||||| ||||||| ||||||||||| || || ||| || |||| ||||||| Sbjct 5053 TTTGGACACCTGATCTCTTTATGAAGCGTGTTGAGAAAAATGGCGAATGGACTCTCTTTT 5112 Query 115699 GTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTTTACG 115758 | ||||||||||| || || | | ||||| |||||| | ||||||||| |||||||| Sbjct 5113 GCCCCAATGAAGCGCCAGGCTTGGCGGATGTCTATGGTGCCGAGTTTGAGGCTCTTTACG 5172 Query 115759 AAAGGTA 115765 ||| ||| Sbjct 5173 AAAAGTA 5179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153755102885924