Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq819 163 6e-35 seq1424 131 4e-25 seq1691 120 6e-22 seq302 105 1e-17 seq1101 86.0 1e-11 >seq819 Length=4427 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| |||||||| || || || | ||| |||||||||||| |||||||| | Sbjct 2035 ACCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGA 1976 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || ||||| || || ||||| | ||||| ||||| || Sbjct 1975 GAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGG 1916 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||| || |||||||| ||||||||| ||| | ||||| || || || ||||| Sbjct 1915 GATACCCTCTTTATCTTGGAT-TTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGA 1857 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || || || || || | ||||| ||||| |||||||| Sbjct 1856 CTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808 Score = 147 bits (162), Expect = 5e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| | | |||| ||| | ||||| || || || ||||||||||| | | Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || ||||| ||||| ||||| || |||||||| | || || || || || Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGC-TTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || || |||||||||||||| ||||| ||||||| | || || ||||| | |||| |||| Sbjct 2142 ATCCCTTCCTTGTCTTGGAT-TTTGCTTTTTACGTTGTCAATTGTGTCAG-AGCTCTCGA 2085 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| || || || |||| ||| || ||||| |||||||| Sbjct 2084 CCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 127 bits (140), Expect = 4e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || ||||| || ||||| | ||| ||||||||||||||| || || | Sbjct 1807 ACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGA 1748 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||||||||| || || || || || || ||||||| |||||| || || | Sbjct 1747 CAAG-GTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGG 1689 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 | || || || || || ||||| |||||| || ||| | ||||| || || |||| ||| Sbjct 1688 GGATCCCTTCTTTATCCTGGAT-TTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCC 1630 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075 || || | ||||| ||||| || || Sbjct 1629 ACCTCCAAGGTGATGGTCTTGCCAGT 1604 Score = 96.9 bits (106), Expect = 7e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | || || || ||||| ||||| || | Sbjct 1472 CCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGAC 1413 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| ||||| | || ||||||||| || Sbjct 1412 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGG 1353 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| || || | || || | |||||||| || | || || Sbjct 1352 ATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACG 1293 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 1292 TCGAGTGTGATGGTCTTCCCGGT 1270 >seq1424 Length=24560 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 |||| | | ||||||||||| || || |||||| ||||||||||| || ||||| ||| Sbjct 23816 GTGCGTACCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCG 23757 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TT 283021 || |||||||| || || ||||| || ||||||||||| || ||||| ||| || || Sbjct 23756 GCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGAT-TTTACTCTT 23698 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 || | ||||| ||||| | ||||| || |||||||| ||||| ||||| | || Sbjct 23697 GACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGT 23638 Query 283082 CTTAACGAA 283090 ||| ||||| Sbjct 23637 CTTGACGAA 23629 >seq1691 Length=23441 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | || ||| ||||||||||||||||||| Sbjct 8973 ACCACCACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGA 9032 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || ||||| || || |||||||| ||||| ||||| || Sbjct 9033 AAGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGG 9092 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 9093 AATGCCCTCCTTGTCT 9108 >seq302 Length=30871 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| |||| ||||| || | |||||| | ||||| || || ||||| |||||||| | Sbjct 11371 CTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTC 11312 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || | || || ||||||| || ||||||| ||||| || | || ||||| Sbjct 11311 CTCGTTGCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGAT 11252 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || ||||| |||||||||||||| ||||| | || || || | | Sbjct 11251 AACATCTCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCAGAAG 11192 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 11191 GCCGGTGT 11184 >seq1101 Length=25671 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 316722 CAGCCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTT 316781 || ||| ||||||||| ||| | ||| |||||||||||||| || || || | | Sbjct 14265 CAACCATTTCACATTCGCTACATCCAAATGATTGGTCGGTTCGTCGAGAAGGAGAACATC 14324 Query 316782 CGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAG 316838 || ||| |||||||| ||||| ||||| |||||||| ||||| || |||||||| Sbjct 14325 AGCTCCCATGAGCATAGCTCGTGCTAGAGCCAGCTTCATCTTCCATCCACCGGAAAG 14381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046679599978376