Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq819 163 6e-35
seq1424 131 4e-25
seq1691 120 6e-22
seq302 105 1e-17
seq1101 86.0 1e-11
>seq819
Length=4427
Score = 163 bits (180), Expect = 6e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| |||||||| || || || | ||| |||||||||||| |||||||| |
Sbjct 2035 ACCGCCACGAAGGCGAAGGACAAGGTGAAGTGTGGATTCTTTTTGGATATTGTAGTCGGA 1976
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || ||||| || || ||||| | ||||| ||||| ||
Sbjct 1975 GAGAGTTCGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATAAGTCGTTGCTGGTCTGGTGG 1916
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||||||| || |||||||| ||||||||| ||| | ||||| || || || |||||
Sbjct 1915 GATACCCTCTTTATCTTGGAT-TTTGCTTTTAACGTTGTCGATGGTATCTGAGCTTTCGA 1857
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| || || || || || | ||||| ||||| ||||||||
Sbjct 1856 CTTCAAGAGTAATAGTTTTGCCGGTAAGGGTCTTTACGAAGATCTGCAT 1808
Score = 147 bits (162), Expect = 5e-30
Identities = 173/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||| | | |||| ||| | ||||| || || || ||||||||||| | |
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| || ||||| ||||| ||||| || |||||||| | || || || || ||
Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGC-TTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050
|| || |||||||||||||| ||||| ||||||| | || || ||||| | |||| ||||
Sbjct 2142 ATCCCTTCCTTGTCTTGGAT-TTTGCTTTTTACGTTGTCAATTGTGTCAG-AGCTCTCGA 2085
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| || || || |||| ||| || ||||| ||||||||
Sbjct 2084 CCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 127 bits (140), Expect = 4e-24
Identities = 155/206 (75%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || ||||| || ||||| | ||| ||||||||||||||| || || |
Sbjct 1807 ACCACCACGGAGACGAAGGACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGA 1748
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| ||||||||||| || || || || || || ||||||| |||||| || || |
Sbjct 1747 CAAG-GTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGG 1689
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
| || || || || || ||||| |||||| || ||| | ||||| || || |||| |||
Sbjct 1688 GGATCCCTTCTTTATCCTGGAT-TTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCC 1630
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || | ||||| ||||| || ||
Sbjct 1629 ACCTCCAAGGTGATGGTCTTGCCAGT 1604
Score = 96.9 bits (106), Expect = 7e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || |||| || | || || || ||||| ||||| || |
Sbjct 1472 CCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGAC 1413
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || ||||| || || || ||||| ||||| | || ||||||||| ||
Sbjct 1412 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGG 1353
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||||||||| || || | || || | |||||||| || | || ||
Sbjct 1352 ATACCCTCCTTGTCTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAACG 1293
Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| || ||
Sbjct 1292 TCGAGTGTGATGGTCTTCCCGGT 1270
>seq1424
Length=24560
Score = 131 bits (144), Expect = 4e-25
Identities = 144/189 (76%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962
|||| | | ||||||||||| || || |||||| ||||||||||| || ||||| |||
Sbjct 23816 GTGCGTACCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCG 23757
Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TT 283021
|| |||||||| || || ||||| || ||||||||||| || ||||| ||| || ||
Sbjct 23756 GCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGAT-TTTACTCTT 23698
Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081
|| | ||||| ||||| | ||||| || |||||||| ||||| ||||| | ||
Sbjct 23697 GACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGT 23638
Query 283082 CTTAACGAA 283090
||| |||||
Sbjct 23637 CTTGACGAA 23629
>seq1691
Length=23441
Score = 120 bits (132), Expect = 6e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || || || | || ||| |||||||||||||||||||
Sbjct 8973 ACCACCACGCAGACGCAGCACGAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGA 9032
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 9033 AAGGGTACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGTTGCTGGTCGGGGGG 9092
Query 282992 AATACCCTCCTTGTCT 283007
||| ||||||||||||
Sbjct 9093 AATGCCCTCCTTGTCT 9108
>seq302
Length=30871
Score = 105 bits (116), Expect = 1e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
||| |||| ||||| || | |||||| | ||||| || || ||||| |||||||| |
Sbjct 11371 CTTCTCGGAATGAACGCCAAGCTCATGTGCCAATACATTGAGTTCGTCGCTGATCGCCTC 11312
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
|||| || | || || ||||||| || ||||||| ||||| || | || |||||
Sbjct 11311 CTCGTTGCTTTGGGCAACAAGAAAGTCTACAACTCCACCAACCCATTTGACTTCATGGAT 11252
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || || || ||||| |||||||||||||| ||||| | || || || | |
Sbjct 11251 AACATCTCCCTGGCAGGTAAAACCAACTTCTTCGAAAAACGTGTTGGTGACTACCAGAAG 11192
Query 230403 CCCGGTGT 230410
|||||||
Sbjct 11191 GCCGGTGT 11184
>seq1101
Length=25671
Score = 86.0 bits (94), Expect = 1e-11
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 316722 CAGCCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTT 316781
|| ||| ||||||||| ||| | ||| |||||||||||||| || || || | |
Sbjct 14265 CAACCATTTCACATTCGCTACATCCAAATGATTGGTCGGTTCGTCGAGAAGGAGAACATC 14324
Query 316782 CGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAG 316838
|| ||| |||||||| ||||| ||||| |||||||| ||||| || ||||||||
Sbjct 14325 AGCTCCCATGAGCATAGCTCGTGCTAGAGCCAGCTTCATCTTCCATCCACCGGAAAG 14381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046679599978376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |