Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1424 105 5e-18
seq819 105 5e-18
>seq1424
Length=24560
Score = 105 bits (116), Expect = 5e-18
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||| |||||| || || | || || ||||| || ||||| ||||
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | ||| ||||| ||| || || ||| || |||
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| ||||||||| ||| || ||||| | || || ||||| |||||||||||||| ||
Sbjct 23689 --CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGAC 23632
Query 44326 GAAG 44329
||||
Sbjct 23631 GAAG 23628
>seq819
Length=4427
Score = 105 bits (116), Expect = 5e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | || ||||||||||| || || ||||||||||| || |||||||| || |
Sbjct 2262 CCACCCCGCAATCTCAACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 2203
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || || ||||| || || |||||||| | ||||||||||||| ||
Sbjct 2202 AGCGTTCGACCATCTTCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGG 2143
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTT-CCTATGGTGTCGGCGGATTCCA 44288
| |||||||| || || || ||| || | ||| | || ||||| | | || |
Sbjct 2142 ATCCCTTCCTTGTC--TTGGATTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCTCTCGA 2085
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| || || || || || || || || ||||||||||| |||||
Sbjct 2084 CCTCCAGTGTGATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| || || ||||| || ||||||||||| ||||| | | || || || | || ||
Sbjct 1788 ACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAATCCGACAAGGTGCGGC-CATCTTC 1730
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| ||| |||||||| | || | ||||| || |||
Sbjct 1729 GAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGATCCGGGGGGATCCCTTCTTTATCCTG 1670
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| || ||||| | | ||||| || | ||||||||||||| || || |||||
Sbjct 1669 GATTTTGCTCTTCACGTTGTCGATGGTATCTGAAGATTCCACCTCCAAGGTGATGGTCTT 1610
Query 44308 TCCCGTGAGGGTCTTCAC 44325
|| |||||||| |||||
Sbjct 1609 GCCAGTGAGGGTTTTCAC 1592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359970902469948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |